Lates calcarifer (barramundi perch): 108877670
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Entry
108877670 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03440
Homologous recombination
lcf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108877670
03460 Fanconi anemia pathway
108877670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcf03032
]
108877670
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108877670
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
108877670
DNA replication proteins [BR:
lcf03032
]
Eukaryotic type
DNA Topoisomerases
108877670
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
108877670
FA (Fanconi anemia) pathway
108877670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
108877670
NCBI-ProteinID:
XP_018523295
UniProt:
A0AAJ7LI64
LinkDB
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Position
LG11:16524078..16538234
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AA seq
1048 aa
AA seq
DB search
MLIVHLLGRSLLRPALQRLGVQQRCLCAVQSVRCPDTPQEADMIRSRAQIKRVLCVAEKN
DAAKGISEIMSSGRARRREGLSKFNKIYEYEYHLFGQNVTVTMTSVSGHLLGLEFKAPFQ
KWHSCNPVLLFDAEVEKYCPDNMIQIKRTLEKEARQCQALIIWTDCDREGENIGFEIIDV
CKAVKPNLQLFRAKFSEITPNSIRRACETLTEPDANISDAVDVRQELDLRIGASFTRFQT
LRLQKIFPESLANQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIKVLHEVEEDSVEF
SWKRNRLFNHTACLVLYQICMEDPIATVTSVTSKPKSKWRPLPLDTVELEKLASRKLRIS
AKETMKIAEKLYTQGFISYPRTETNIFPATLALGPLVEQQTQSPVWGTFAQQVLDQPGGP
NPRQGKNSDQAHPPIHPTKYTSTLQGNEGRVYEFIVRHFLACISQDAQGQETVVDIDIAQ
EKFSTSGLMIIARNYLDVYPYDKWSAKVIPVYEQGSQFQPSAIEMVDGQTSPPQLLTEAD
LISLMEKHGIGTDATHAEHIETIKSRMYVGLTADQRFLPGELGMGLVEGYNSMGYEMSKP
NLRAELEADLKLVSQGRKDKQSVLLHHIQKYKTVFIESVRKAKKLDEALSPYLGAAQEIT
ETEQQDIEIPLPVRKCPNCGRDMVLKKKREGNSKYLSCMGFPACKTAVWFPDTVLEVSRD
DSICPTCQPHPCFRLNFKFRRGSLPPMMPLEFVGCIGGCDDTLREVLDLKYLRAGGGGGG
GGGVGEGGGRGRGGGGRGDDPWPPDARPPRPQLPRAPRSNPHPSLPPVPSWTPQPRPPAG
GGVSSADPSRDAIVCNCGQDALLLTVRKNGPNQGRQFYKCNSGSCNFFLWADQPDQEGAP
QSQGPPRPLPAPRTSQPPPRPSLGFTNPSGGSRGQEGSAGGQVGHTMCNCNEAAVTRTVQ
KDGPNKGRMFQTCGKPREQQCGFFQWADENVPPAGGFGGGFNGGGDGGKRGRKIMGDTNP
NKPPAAKKPRTCGICHMPGHTRITCPQR
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgctaatagtgcacctcctcgggagatccttgcttcgaccggcactacagcgactcggg
gtccagcagaggtgtctctgtgcggtgcagagtgtccggtgtccggacacaccgcaggag
gcagacatgatccggagccgggctcagatcaagcgggtcctctgcgtagccgagaagaac
gatgcagccaaaggcatctcagagatcatgtccagcggcagggccaggaggagggaaggg
ctgtcaaagtttaataaaatctatgagtatgaatatcatctctttggtcagaatgtgaca
gtaacaatgacatctgtatcaggccatttactgggtctggagtttaaagcaccgtttcag
aaatggcacagttgcaatcctgtgctgttatttgatgcagaggtggagaagtattgtcca
gataacatgatacagatcaagaggacactagagaaagaggcgaggcagtgccaggcctta
atcatctggactgattgtgaccgagagggagaaaacattggctttgaaatcatagatgtc
tgcaaagcagttaagcccaatttacaactctttcgggcaaagttttctgaaataaccccc
aactccattcggagagcttgtgagactctaacggagccggatgccaacatcagtgatgct
gtcgatgtccgtcaggagctggacctgcggataggtgcatccttcactcgattccagacg
cttcgcctgcagaagatctttccggagtctctggccaatcagctgatctcatacggcagc
tgtcagtttcccactctgggttttgtggtggagcgcttcaaagccatccaggctttcata
cctgagactttctacaagatcaaagtgctccatgaggtcgaagaggactctgtagagttc
agctggaaaagaaatcgactgttcaaccacacagcttgcctggtgctctaccagatctgc
atggaggatcccatagcaacagtcacctcagtaaccagcaaacccaagagcaagtggaga
ccgctgcctttggacactgtggaactggagaaactggcatctcggaagctcagaataagt
gccaaagagaccatgaaaattgcagaaaaactctacacccaagggtttatcagctacccc
cgcacagaaactaacatttttccggcaaccctggctcttggccccctggtggagcagcag
actcaaagcccagtctgggggacattcgcccagcaggtacttgaccagcctggaggtccc
aatccacggcagggcaagaactctgaccaagcccatcctcccatacaccccaccaagtac
accagtacgctgcagggtaatgaagggcgtgtgtacgagttcattgtcaggcacttcctg
gcctgcatatcccaggatgctcaggggcaggagacggtggtggacatagacatagcccag
gagaagttctccacctcaggacttatgatcattgcgaggaactacctagatgtttacccg
tatgacaagtggagtgccaaggtgattccagtgtacgagcagggctcccagtttcagccc
tctgctattgagatggtggatggacagacgagtcctccacagctgctcactgaagccgac
ctcatatcactgatggagaaacatggcattggcacagatgcgacccatgcagagcacatt
gagactataaagagtcgcatgtacgtgggcttgacagctgaccagaggtttctcccaggg
gagcttggcatggggctggtggagggttacaactccatggggtatgaaatgtccaaacca
aacctgcgcgctgaattagaggcagatctcaagctggtatcacagggcaggaaggacaaa
cagagcgtgctgctgcaccacatccagaaatacaagaccgtcttcatcgagtctgtcagg
aaggcaaagaagttagacgaagccctgtcgccatatctgggtgcagcccaggagatcact
gaaacagagcagcaggacatagagatcccgctgccggtcaggaagtgccctaactgtggt
cgggacatggtgctgaagaagaagagggagggaaacagtaagtacctgtcctgtatgggt
ttcccggcctgtaagacagcagtgtggttccctgacacagtgctggaggtcagcagagat
gacagcatctgtcccacctgtcagccacatccctgcttcaggttgaacttcaagttccgc
aggggcagcctccctcccatgatgcctctggaatttgttggctgcattggtggatgcgac
gataccctcagagaggtgctggacctgaaatatctcagagcaggaggaggaggcggaggt
ggtggaggagtgggagaaggtgggggaagaggaagaggagggggaggaagaggagatgac
ccttggccaccagatgcaaggccccccagaccacaactgcccagagccccacgttctaat
cctcacccctcccttccccccgtcccctcctggaccccacagcctcgacctccagccggc
ggtggtgttagcagtgcagaccccagcagagatgccatcgtgtgtaactgtggtcaggac
gcacttctcctcactgtgcgcaaaaacggtcccaaccaggggcgtcagttctacaagtgc
aacagcgggagctgcaacttctttctgtgggcagatcagccagaccaggagggggcgccg
cagagtcaggggcctccacgtccactcccagcaccaaggacctcccagcctcctccaaga
ccctctttggggttcacgaacccatctggagggagcagagggcaggaagggagcgcagga
ggacaagtgggtcacacaatgtgtaactgtaatgaggcagcagtgacgcgcacggtgcag
aaggacggcccaaacaagggccggatgttccaaacctgcgggaaaccaagagagcagcag
tgtggcttcttccaatgggctgatgagaacgtacctccagcaggtggttttgggggtgga
tttaatggcggtggagacggagggaagagggggaggaagataatgggagataccaaccct
aacaaacctcccgctgctaagaaaccccgtacctgcggcatctgtcacatgccagggcac
acccgaatcacctgtccccagcggtga
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integrated database retrieval system
