Lates calcarifer (barramundi perch): 108877749
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Entry
108877749 CDS
T04895
Name
(RefSeq) transcriptional repressor CTCF
KO
K23195
transcriptional repressor CTCF
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108877749
03036 Chromosome and associated proteins [BR:
lcf03036
]
108877749
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
108877749
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
108877749
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_7th_ZNF462
Zf-C2H2_ZNF451
Zf-C2H2_ZNF451_C
Roughex
zf-met
LIM
zf-C2HE
RXT2_N
zf-C2H2_6
zf-C2H2_15
zf-WIZ
Motif
Other DBs
NCBI-GeneID:
108877749
NCBI-ProteinID:
XP_018523407
UniProt:
A0AAJ7LJH7
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Position
LG2:29119207..29127261
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AA seq
764 aa
AA seq
DB search
MEGEVVSMETTQTAEGKVLPEGREALQGAAMAPQGEVVGNMEMMVMDALDPALLQMKTEV
LEGGSTVTVTGGDEGQIITLQVVNMEEQAGAGLGLGQLQLVQVPVTTTTVEGLQATYVDA
STANKDAEPVICHTLPLPEGFQVVKVGANGEVETVEQEELQAAHDELQRTRGEGEEEEEE
EAAEVEPPAAQEEDPEWSKDPDYQPITTVRKGKKGKKSRLRYAEGDRDMDVSVYDFEEEQ
QEGLLSEVNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDER
PHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCTDCDMAFVTSGELVRHRRYKHTHEKPFK
CSMCDYSSVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYIC
HARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSFIETGKKCRYC
DAVFHERYALIQHQKTHKNEKRFKCDQCDYCCRQERHMIMHKRTHTGEKPFACSQCEKTF
RQKQLLDMHFKRYHDPNFVPTAFVCSKCSKTFTRRNTMLRHAENCTGEVGEENGTPTPKK
SRRGRKRKMQARADDDDDDDDDDDDTEGDLDEAEEEEEDLLTEIEVEQAPPVVPIPAPVE
PPVKRKRGRPPKNKPDTAAIIRVEDEATGEVDDIIVKKEVGADQDDQDDGNEDAAEGVVV
GGVKSTIQMEELSQEEGTAQEAQLSGAPPNGDLTPEMILSMMDR
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgaggttgtttccatggagaccactcagactgcagagggaaaggtcctgcca
gagggcagagaggccttacaaggggcagccatggccccacagggtgaggtggtaggtaac
atggagatgatggtgatggacgctctcgatccggctctgctgcaaatgaagacagaggtg
ttggagggaggcagcacagtgactgttaccggtggagacgagggtcaaatcatcacactc
caggtggtgaatatggaggagcaggcaggtgctggactggggcttggtcagcttcagctg
gttcaggtaccagtcacaacaacaactgtggagggcctccaggccacatacgttgatgca
tcaactgcaaacaaggatgcagagccggttatctgtcacactcttcccttgcctgagggc
ttccaggtggtaaaagtgggtgccaacggtgaagtggagaccgtagagcaggaggagctc
caggcagcccatgatgagcttcagaggacaagaggagagggggaggaagaagaagaagaa
gaggcagcagaagtagaaccccctgcggctcaggaagaagaccccgaatggtcaaaggac
ccagactaccagcccatcaccactgtccgcaaaggaaagaagggaaagaagagtcgcctg
cgctatgcagagggtgaccgtgacatggatgtgtctgtgtatgactttgaggaggagcag
caggaagggctgctgtcagaggtcaatgctgagaaggttgtgggcaacatgaagccacca
aagcccaccaagatcaagaaaaaaggtgtaaagaagactttccagtgtgagctgtgtagc
tacacctgtccaaggcgctccaacctggaccgacacatgaagagccacacagatgagagg
ccacataaatgtcacctgtgtggaagggcctttagaacagtcacactgctgagaaaccac
ctcaacacacacacaggcactcggccacataaatgcactgactgtgacatggcattcgtg
actagcggcgagttggtgcgtcatcgtcgctacaaacacacacacgagaaacccttcaag
tgctccatgtgtgactattccagcgtggaggtgagcaagttgaaaaggcacatccgctct
cacacaggggagcgacccttccagtgcagtctgtgcagctatgccagcagagacacttac
aagctgaagagacacatgaggacacattcaggtgagaagccatatgagtgttacatctgc
catgctcggttcacacagagcggcaccatgaagatgcacattctgcagaaacacacagag
aatgtggccaagttccactgcccacactgtgacactgtcatcgctcgcaagagtgacctt
ggcgttcatttacggaagcagcactcgtttattgagacggggaagaaatgtcgttactgt
gatgctgtatttcatgagcgctatgccctcatccaacaccagaagacccacaagaatgag
aaacgtttcaagtgtgaccagtgtgactactgctgcagacaggaacgccacatgataatg
cacaagcgtacacacacaggggagaagccatttgcctgcagccagtgtgagaaaactttc
cggcaaaagcagctcctggacatgcacttcaagcgctaccatgatcccaactttgtcccc
actgccttcgtttgcagcaagtgtagcaagacgttcacccgcaggaacaccatgctacgt
catgctgagaactgcacaggtgaagttggagaagaaaatggaacacccacacccaaaaag
agccgtcgtggcaggaagaggaaaatgcaggccagggcggatgatgatgacgacgacgac
gacgatgatgatgacactgagggtgatttggatgaggcagaggaggaagaggaggatctg
ctaactgagattgaggtggaacaggctccaccagtcgtccccatcccagcccctgtggag
ccaccggtcaagagaaaacgtgggcgacccccgaagaacaagccagacaccgctgccatt
atccgtgttgaggacgaggccactggagaggtggatgacatcattgtgaagaaggaggtc
ggagctgaccaagatgaccaggacgatggcaacgaggacgccgcagagggggtggtggtt
ggcggggtgaagtcaaccattcagatggaggagctgtcccaggaagaggggacagcacag
gaggcacagctgtccggagccccacctaatggagatctgacccctgagatgatcctcagc
atgatggaccggtga
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