Lates calcarifer (barramundi perch): 108877922
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Entry
108877922 CDS
T04895
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108877922 (ddx20)
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108877922 (ddx20)
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
108877922 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
108877922
NCBI-ProteinID:
XP_018523688
UniProt:
A0AAJ7PGI6
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Position
LG6:complement(15723897..15730377)
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AA seq
791 aa
AA seq
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MASSMRKAAHDIETRKRTDDVLLSEGVDFCSLLLSQPVLDGLSAAGFQKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFCTIALDSLVLENPATQVLVLAPTREIAVQIHSVVMAIGC
AMEGLECHVFIGGRSVSQDKPHLKKCHVAVGSPGRIKQLIELGMLSTASIRLFVLDEADK
LLEEGSFQEQINWIFSSLPVNKQMLALSATYPESLAQHLTRYMREPTFVRLNPSDMGLKG
LKQYYKLVQSHPLPHKVFEEKVQHLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLP
AVCISGGLSQDQRLEAMSKLKQYQCRVLISTDLTSRGIDADKVNLVINLDVPQDWETYMH
RIGRAGRFGTQGLAVTYCCHGEEENKMMAIAQKCGLSLSALPSAIEPGLMDEPCDWDVCT
EAATPVSLSQFISRTEKKRRAKADMPAAAAATASITDQAVEHKGPTKPEKTHPTPKRGAH
NDQAARKVSPVSPTQEVQSRKQMQDALPKIPPLSSYKSCRSRFMTFEEAERDFQSFITTG
LGRSVEVIREFRGREEDCSSDQNGHRVSFTLNDEGAQSLTQNRGQWKSNFSPTRSVSGSS
GSESDMEESQPDNETLGSSDHTRGGEHRVVTQPQTDARNTLTVAKPKSSPKAYTSSAPKV
HHQVPENYKSVPSISSKRVTNQAASAQTGRHESRKAKGEIGKRNKKLSEKMNREQMRDRD
EGEQDGDDDEDAGDEWGAETYWRACYRAWNDYYASMAPFQEQGYQSYYSVAHNWMAAYRM
NAVYMEELLKN
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcctccatgaggaaagcagcccacgacatagaaacgcgaaagcggaccgatgat
gtgcttttgtcggagggggtcgacttctgctccctcctgctgtctcagcccgtgttggac
ggactgtccgccgcaggctttcagaaaccctccccgatccagctcaaggccatcccgctg
ggccgctgcggactcgatttgatcgtacaggccaagtctggcacgggtaagacgtgcgtg
ttctgcaccatcgccctggactctctggtcctggagaatccggcaactcaggttcttgtg
ttggctcctacgcgtgagatagcagtgcagatccactcagtagtgatggccatcggctgt
gccatggagggcctggagtgccacgtttttatcgggggcaggtccgtgagtcaggacaaa
ccccacctgaagaaatgccatgtagctgtgggctcgcctggtcgtatcaagcagcttatt
gagctgggcatgttgtccacggccagcatcagactgtttgttctggatgaggcagacaag
ctgctggaagaaggcagcttccaggagcagataaactggatcttctcctctctgcctgtg
aataagcagatgctcgcactctctgccacctacccagaatcccttgcgcagcaccttacc
cgctacatgagggagcccacctttgttagactcaatcccagtgacatgggcctcaaaggt
ctgaagcagtattacaagctggtgcagtcccatccgttacctcacaaggtttttgaggag
aaggtgcagcacttattggagctgttcagtaaaatcccattcaaccaggccctagtgttt
tccaacctacacacaagggctcagcacctggcagatatcctgtcctccaaaggcttacct
gctgtttgtatctcaggtggtctgagtcaggaccagagactggaggcgatgtccaaactg
aagcagtaccagtgcagggtgctcatctccactgacctgacttccagaggcatagatgca
gacaaagtcaacttggtgataaacctggatgtaccgcaggactgggaaacctacatgcac
agaatcggacgggccgggcgcttcggcactcaggggctggctgtgacatactgttgccat
ggtgaggaggaaaacaagatgatggccattgctcaaaagtgtggcctgagtttgtccgcg
ttgccgtccgccatagagcctgggctgatggacgagccgtgcgactgggatgtctgcact
gaggctgccactccggtctccttgtcccagttcatctccaggacagagaagaagaggcgt
gccaaggctgacatgcctgctgctgctgctgctaccgcctccatcacagaccaagctgta
gagcataagggaccaacaaagccagagaagacccatccaacacccaagagaggagcacac
aatgaccaagctgctagaaaagtctctcctgttagtcctactcaggaggtccagagccga
aaacagatgcaagacgcattaccgaagatccctcctctcagctcgtacaagagttgcagg
tcgaggtttatgacctttgaggaagctgagcgggacttccagagcttcattaccacgggg
ttggggagatcagtggaggtcatcagggagttcagaggtcgggaggaagactgctccagt
gaccagaatgggcacagagtgtctttcacacttaatgatgaaggagctcaaagtttaaca
caaaatagaggacaatggaaatctaacttttcacccacaaggtcagtttctggttcttcg
ggctccgagtcagacatggaggagagccagccagataatgagacactgggaagctcagat
cacactagaggaggtgaacacagagtggtgacgcaacctcagactgatgctagaaataca
ctaactgtagccaaaccaaaatcaagtcccaaagcttatacttcttctgcacccaaagta
catcaccaggtgcctgagaactacaaatctgtgccaagcatcagttcaaaaagagtaacc
aatcaggctgcttcggcgcagactggcagacatgaatcaagaaaggcgaaaggagagatt
gggaaacggaacaaaaagctctcggagaagatgaacagagagcaaatgagggacagggac
gaaggtgaacaagatggtgatgatgatgaagacgccggtgatgagtggggtgctgagact
tactggagagcctgctatagagcctggaacgattactacgcctccatggctccttttcaa
gagcaaggctaccaaagctactacagcgtagctcacaactggatggcggcttatcgaatg
aacgccgtctacatggaagaactccttaaaaactaa
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