Lates calcarifer (barramundi perch): 108877963
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Entry
108877963 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: RNA polymerase II-associated factor 1 homolog
KO
K15174
RNA polymerase II-associated factor 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108877963
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
108877963
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Paf1
Motif
Other DBs
NCBI-GeneID:
108877963
NCBI-ProteinID:
XP_050921366
UniProt:
A0AAJ8AW13
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Position
LG21:complement(15754730..15760072)
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AA seq
533 aa
AA seq
DB search
MAPTIQTQAQREDGHRPSSHRTVPERSGVVCRVKYCNSLPDIPFDPKFITYPFDQHRFVQ
YKATSLEKQHKHELLTEPDLGVTIDLINPDTYRIDPNILLDPADEKLLEEDIQAPSSSKR
SQQHAKVVPWMRKTEYISTEFNRYGVSNEKVEVKIGVSVKQQFTEEEIYKDRDSQISAIE
KTFEDAQKSISQHYSKPRVTPVEILPVFPDFKMWINPCAQVIFDSDPAPKDISGPAGVEM
MSQAMIRGMMDEEGNQFVAYFLPNEDTLRKRKRDCEEGVDYMPDDLYDYKIAREYNWNVK
NKASKGYEENYFFIFRDGDGVYYNELETRVRLSKRRAKAGAQSTTNAVLVCKHRDMNEKE
LEAQEARKAQLENHEPEDEEEDMDMDKDMQDSGDEKDKGSGSEVENSGSESEREDEDREQ
RGEDDEEDEDRGKRRRKASGSGSESGEERTREMRDEEEIFGSDDDSDDNEPKNRSSGDEG
SGSEDEGRNRGGSRSRSASPAHSDRSSDHSEAQAQSGSGSDRGSDSSDASDSE
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atggctccaacgattcagactcaagctcaacgagaggacggacacaggccgtcctctcac
agaactgtcccggagaggtcaggagttgtctgtcgagtgaagtactgcaacagcctgcct
gacatcccttttgatcccaaattcatcacatatccttttgatcagcacagatttgtacag
tataaagccacttctctagagaagcagcacaagcatgagctcctgactgagccagacctt
ggggtcaccattgatctcatcaacccagacacctaccgcatagatcccaacatattgctg
gatcctgctgatgaaaaactattggaagaggacatccaagctccatccagttcaaagagg
tcacagcagcatgccaaagtggtgccgtggatgagaaaaacagaatatatttcgacagag
tttaacagatatggcgtttccaatgagaaagtggaagtcaagatcggtgtatcagtcaaa
caacagtttacagaggaagaaatttacaaggacagagacagccagatttctgctattgag
aagacatttgaggatgcacagaaatcgatctcacagcactacagtaaacccagagttact
cctgtggagatactgcctgtgttccctgacttcaagatgtggatcaacccatgtgctcag
gtcatctttgactctgatcctgcacctaaagacatatcagggccagcaggagtggaaatg
atgtctcaggctatgatcaggggtatgatggatgaggaaggaaaccagtttgtggcctac
ttcctgcccaatgaagacacacttcgcaagcgcaagagagactgtgaggagggtgtagat
tatatgcctgatgatttgtatgattacaagatagccagggagtacaactggaatgtcaag
aacaaagccagcaagggttatgaggagaactacttctttatcttcagagatggagatggt
gtttactacaatgagctcgagacaagggtgcgtttgagcaagagaagagccaaggctgga
gcgcagtcgaccacaaacgcagtgctggtgtgtaagcacagagatatgaatgagaaagag
ctcgaagctcaggaagcacgtaaagctcagctggagaaccatgagccagaagatgaagag
gaagatatggacatggataaagacatgcaggactctggtgatgagaaagacaagggcagc
gggagtgaggtggagaactctggcagtgaatcagagagggaggatgaagaccgagaacaa
aggggagaagatgacgaagaggatgaggacagagggaagagaaggaggaaagcaagcggc
agcgggagtgaaagcggcgaggagaggaccagagagatgcgagacgaggaagagatcttc
ggcagcgatgatgacagtgacgacaacgagccgaagaacaggagcagcggggacgagggc
agcgggagtgaggatgaagggaggaacagaggaggcagcaggagtcggagcgcgtctcca
gcacacagcgatcgcagcagtgaccactcagaggcccaggctcagagtggaagcggaagc
gacagaggctcggactccagtgatgccagcgacagtgaataa
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