Lates calcarifer (barramundi perch): 108878003
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Entry
108878003 CDS
T04895
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108878003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108878003
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108878003
mRNA degradation factors
5'-3' decay
Lsm complex
108878003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
108878003
NCBI-ProteinID:
XP_018523802
UniProt:
A0A4W6FUL6
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Position
LG13:15641806..15644904
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AA seq
133 aa
AA seq
DB search
MNYVPGTASLIDDIDKKHLVLLRDGRTLIGYLRSIDQFANLVFHQTVERIHVGKKFGDIP
RGIFIVRGENVVLLGEIDVDKPCDTVLQQVSIEEILEEQRLQQQAKQETEKVKMQVLKDR
GLSIPKADNLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaactacgtaccggggacggcaagcctcattgacgacatcgacaagaagcacctggtg
ctgctccgagatggcagaacactgatcggttacctcagaagcattgatcagtttgccaat
ttagtttttcatcagacagttgaacgaatccacgtggggaaaaaatttggtgacatcccc
agaggaatattcatcgtgagaggagagaatgtggtcctgctgggagagatagatgtggat
aagccctgtgacacagtcctgcagcaagtctccatcgaagagattctggaggagcagcgg
ttgcagcagcaagccaaacaggagacagagaaagtcaaaatgcaggtcctaaaggaccga
ggcctttccatccccaaagctgacaacttggatgaatactaa
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