KEGG   Lates calcarifer (barramundi perch): 108878119
Entry
108878119         CDS       T04895                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03030  DNA replication
lcf03410  Base excision repair
lcf03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108878119
   03410 Base excision repair
    108878119
   03420 Nucleotide excision repair
    108878119
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lcf03032]
    108878119
   03400 DNA repair and recombination proteins [BR:lcf03400]
    108878119
Enzymes [BR:lcf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     108878119
DNA replication proteins [BR:lcf03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    108878119
DNA repair and recombination proteins [BR:lcf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      108878119
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 zf_DPOE_2 zf-DPOE DNA_pol_B DNA_pol_B_exo2 RNase_H_2 APP_N zf-RRPl_C4
Other DBs
NCBI-GeneID: 108878119
NCBI-ProteinID: XP_018524002
UniProt: A0A4W6GAE6
LinkDB
Position
LG13:10881489..10897415
AA seq 2294 aa
MVLQNSGRYRADRGQSGGDQENQDDGSSMSALKRLERSQFTDEMDARFGFDRMKEPGEKT
GWLINMHPTEILDEDKRMISAVDYYFIQEDGSRFKVALPFKPYFYIATKKNCEREVISYL
SRKFQGKVAKLEIIPKEDLDLPNHLVGLKRNYIKLLFNTVDDLIKVKREIGPAVRKNRDR
EQSNDAYTSMLSSALSGGNVTSADEDTMSKSISDQLDNIVDMREYDVPYHVRVSIDLKIH
VAHWYNVRYRGSAYPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAESDQIMMISYM
IDGQGFLITNREIVSENIEDFEFTPKPEYEGPFTVFNEDDEAALIQRWFDHVQETKPNIF
VTYNGDFFDWPFVEARAALHGLNMHREIGFQKDSQGEYKSSQAIHMDCLRWVKRDSYLPV
GSHNLKAAAKAKLSYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIF
ALCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQEQVFNKLTDDGHVMDSETY
VGGHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVERTMRHAVEEEEKIPLEQVTNFNEV
CDEIKRKLTSLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKP
GATCQRRMTWQWRGEIMPASRSEFHRIQQQLESEKFPPLFPNGPPRAFHNLNREEQAKHE
KKRLADYCKKAYKKTHVTRLEERVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKL
SSAQDNGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCYTG
ANIITQARELIEQIGRPLELDTDGIWCVLPNTFPENFVVKTSNEKKPKVTISYPGAMLNI
LVKEGFTNDQYHELVDPASLTYNIRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVF
NEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYS
KAANMPDAELFDLISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYV
ISRKPEGSPVTERAIPLAIFQAEPSVKKHFLRKWLKMPSLHDLDIRSILDWSYYIERLGS
AIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQVAHQP
LEAGRAADIEDFGMPARPLQPAILISTKRKRASQGEDSQVESQDVELTQSWREILGPPPP
MGKTREERLVWLRYHKKKWELQLKQRKERKKRRRLLDGEAQPVGGGVIRDGPTTGLGSFL
RRTARSILDMPWQIVQIAETSHPGLFKLWAVIGNDLHCMKLSIHRVFYVNQKVPKQEEGA
TYKKVNRMLPRSNIVYYLYEYCVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRALV
QLGCVCMVNKHVVRDLAGREADTFDLEHLEMRSLAQFSYLEPGSVRHMYLYHHSQGHKAL
FGLFIPSQRKASIFVLDTVRSNQMPNLSNLYTTERTALLEKTTEELLPPEKHNFEVRAEN
DVKAIYRALQRILLNYKEERRGPTLIAVQSNWELRRLAAGMTVLEEFPVVPVHVVDEISY
NVLDWQRHGARRMIRHYLNLDSCLSQAFDMARYYHLPVGNLPQDVSIFGSDLFLARHLRK
HNHLLWLSPTARPDLGGKEADDSRLVMESDDRGSVEINAQGCYSTVCVELDLQSLAVNTI
LQSQHVNDMEGGASLGVSFDVIQQASLEDMMSGNQGASAVASYDETALCSNTFRILKSMV
VGWVREITQYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLHNMMKKVFLQLVAEFKRL
GSTVVYGNFNRMILCTKKRRIDDAIGYVEYITNSIHSREIFHSLSMSFSRCWEFLMWMDP
ANYGGVKGKLPSSVLYGEEGAKQRKNKREGDEDGSEDEDEDEAGVEEDDGDGETDEVEEL
IESNWNIMQYLPQTASCQQYFLMIVSAYIAAVYHSMKEELRRNAPGATPVKRRGGSQASQ
QAVGDLSALPGMISFSQEYVSSELTQNFFTITQKIQKKVTGTRSVTQPSEMFPILPGSHL
PLNNPALEFIKYVCQVLSLDANIVNQVNKLKRDLLRLVDVGEFSDDAQFRDPCNSYILPE
VICHHCNFCRDLDLCKDPSVAQDGSVLPQWFCSNCQAQYETETIEMALVEALQKKLMSYT
LQDLVCTKCKGVKEANMPLYCGCAGDFDLSFSAKSFSEQITVFRNIASHYSMSFLEETID
WLLVMSPQISQSAR
NT seq 6885 nt   +upstreamnt  +downstreamnt
atggtgctgcagaacagtggacggtacagagcggaccgaggacaaagtggaggagaccag
gagaaccaggacgatggatcctcgatgtcggctctcaagcggctggagcgcagccagttc
accgacgagatggacgctcgcttcggcttcgacaggatgaaggagccgggggagaaaaca
ggctggctgatcaacatgcaccctacagagattttggatgaagacaagaggatgatcagt
gctgtggattattatttcattcaggaggatggtagcaggtttaaggtggcactccccttc
aagccatatttctacatagccactaaaaagaactgcgagagagaggtcatctcatactta
tcaaggaagttccaaggaaaggtggcaaagcttgaaattatcccaaaagaggaccttgac
ctgccaaaccacttggttggactaaagagaaactacatcaagttgttgttcaacactgtg
gacgatctcatcaaagtgaagcgtgagattggcccagcggtacgaaaaaacagagacagg
gagcagtccaatgacgcctacacttcaatgttgtcaagcgccttatcaggtggcaatgtg
acctctgcagatgaagacacgatgtcaaagagtatctcagaccagttagacaacatagtg
gacatgagagagtatgacgtgccctatcacgtgcgagtgtccatcgacctcaagatccac
gtggctcactggtacaatgttcgatacagaggcagtgcctacccaccggagattgtacgg
agagacgatcttgtggagcgaccggaccccgttgttttggcttttgacattgagaccacc
aaacttccactgaaattcccagacgcagagagtgaccagatcatgatgatctcctacatg
atagatggacaggggtttctaatcacaaacagagagattgtctcagagaatattgaagat
tttgagttcactcccaaacctgaatatgaagggcctttcactgttttcaatgaggatgat
gaggcggcactcattcagaggtggtttgaccacgttcaagaaaccaagccaaacatcttt
gtaacatacaacggagacttctttgattggccttttgttgaggctcgggctgccctccac
ggactgaacatgcacagggagattggtttccagaaggatagccagggggagtacaagtcc
agtcaggccatccacatggactgcttaaggtgggtaaaaagagacagctacctgccggtg
ggaagtcataatctgaaggctgcagcaaaggctaaactgagctatgacccagtggagctg
gacccagaggagatgtgccgcatggcaacagaggagccacagactttggcgacctactct
gtgtcagatgccgtggccacgtattacctgtacatgaaatacgttcatcccttcatcttt
gctctgtgtaccatcatccccatggagcctgacgaggtgttgcgtaaaggttctgggact
ctgtgcgaggccttgctcatggtgcaggccttccacgccaacatcgtcttccccaacaag
caggagcaggtcttcaacaagctgacagacgacggccacgtcatggactctgagacctat
gtgggcggccacgtggaggcgctggagtctggagtgtttcgcagcgacatcccctgtcgt
ttcaaaatgaacccagctgcatttgacttcctgctgcaaagagttgagagaacgatgcgt
cacgccgtcgaagaagaggagaaaatccctttggagcaagttacaaactttaatgaggtc
tgtgatgagatcaagaggaagttgacatccctgaaggaggttccaaacaggatcgaatgt
cccctcatctaccatctggacgttggggcgatgtaccccaacatcattctcaccaaccgc
ctgcagccatctgctatggttgacgaagccacttgtgctgcctgtgactttaacaagcct
ggagccacctgccagaggaggatgacctggcaatggagaggagaaatcatgcctgccagt
cgcagtgagtttcaccgtatccagcagcagctcgagtcagagaagttcccgccgctgttc
cccaacggtccacctcgggcctttcacaatctcaacagagaggagcaggccaaacatgag
aagaaacgtttggcagactactgtaagaaagcctataagaagacgcacgtcaccaggctg
gaggaacgagtcaccaccatctgtcaaagagaaaattccttctatgtcgatactgtgaga
gctttcagagatcggcgttacgaattcaaaggactccacaaggtctggaagaagaaactg
tcctcagctcaggacaacggagacgctgccgaggtgaagcgctgcaagaacatggagatc
ctgtatgagtctcttcagctagctcataagtgtattctcaactctttctatggctacgtc
atgaggaaaggggcgcgctggtattccatggagatggctggcattgtgtgctacaccgga
gccaacatcatcactcaggccagagagcttatcgaacaaatagggaggccgcttgagttg
gacacagatggtatctggtgtgtcctccccaacaccttccctgagaactttgtggtgaag
acaagcaatgagaagaagcccaaggtgactatctcctacccgggggccatgctgaacatt
ctggtgaaggagggattcaccaatgaccagtaccacgagctggtcgaccctgcgtccctc
acgtacaacatcaggtcagagaacagcatattcttcgaggtggacggaccgtacctggcg
atgattctgcctgcctctaaagaggaagggaagaagctgaagaaaagatatgctgtgttt
aatgaggatggctctcttgctgagctgaagggttttgaggtgaagagaagaggagagctc
cagctcattaagattttccaatcatcagtgtttgaggctttcctcaaaggtaccactctg
gaagaggtctacgcctctgtggccaaagtggccgactactggctggacgtcctgtacagc
aaggctgccaacatgccagatgcagagctgtttgacctgatttcagagaaccgttcgatg
tccagaaagctggaggactatggagagcagaagtccacctctatcagcacagctaagaga
ctcgctgagttcttgggagaccagatggtgaaagatgctggtctgagctgtcgctatgtc
atctctcgaaaaccagagggttcacctgtcacagaaagagccattcctctggccatcttc
caggcagagcccagtgtgaaaaaacatttccttcgtaagtggttgaagatgcccagcctt
catgacttggacatccgctctatccttgattggagttattacatagaaaggttgggtagt
gccatccaaaaaatcatcaccatccccgcagctctgcaacaggtgaagaacccagtgccc
agagtgaggcatcctgactggcttcacaagaaactcctagagaaaaatgacatttacaag
caaaagaaaattagtgagttgttcaccagtgagggcaagagacaggtggcccatcagcct
cttgaggcaggccgggctgcagacatagaggacttcgggatgccagccagacctctacag
ccagccatcctcatcagcaccaagaggaagcgggcatctcagggagaggacagccaggtg
gaatcccaggatgtcgagctcacccagtcctggagagagatcctgggaccgcccccaccg
atgggaaagacacgggaggagcgtctagtgtggctacgttaccataagaaaaagtgggag
ctgcagctgaagcagaggaaggaaagaaagaaaaggaggaggctgctggatggtgaagct
caacctgttggcggaggagtgatcagagacggccccaccaccggcctgggaagcttcctc
cgcagaacggcacgcagcatcctggatatgccgtggcaaatcgtgcagattgcagagacc
agtcaccctggtctgttcaagttgtgggctgtgattggaaatgacctccactgcatgaag
ctcagcatccaccgcgtcttctatgtcaatcagaaagtcccgaaacaagaggagggagcc
acatacaaaaaggtgaaccgcatgctgcctcgctccaacatcgtgtactacctttacgag
tactgtgtaccagaggacatgtaccaggaacacatcaatgagatcaacgcagacctctct
gcaccagacattgaaggagtctatgaaacacaggtccctttgctgtttcgtgcgctggtg
cagcttggatgtgtgtgtatggtcaataagcacgttgtgagggatctggccggcagggag
gctgacactttcgacctggagcatctggagatgaggtctttggcccagttcagctaccta
gaacctgggagtgttcgccacatgtacttgtaccatcacagccaggggcacaaggctctg
tttggcctgttcatcccctctcaacgcaaagccagcatctttgtcctggacacagttcga
agcaaccagatgcccaaccttagtaacctttacacaactgaacgcactgcccttctggag
aaaacaacagaggagcttctgcctccagagaaacacaattttgaagtccgagctgaaaac
gacgtgaaggctatctaccgtgcactgcagcgcatactgctgaactacaaggaggagcgt
cgtgggcccaccctcatcgctgtgcagtcaaactgggagttgcggcgattggcagcaggg
atgacggtgcttgaggagttcccggtcgttccagtgcatgtggttgatgaaatcagttac
aacgtgctggattggcagcgccatggtgcccggcgcatgatccgccactacctcaacctg
gacagctgcctgtcgcaggctttcgacatggccaggtattaccacttacctgtggggaac
ttgcctcaggatgtgtccatctttggctcagatttgttcctggcaagacatctacgcaaa
cacaaccacctgctgtggctttcacccacggccagacccgacctcggaggaaaagaggcc
gatgacagtcgtctggttatggagagcgatgacaggggctctgtggagatcaatgctcaa
ggatgctattccacagtgtgtgtggaactggacctgcagagcctggcggtgaacaccatc
ctccagtcgcagcatgtcaatgacatggagggcggagccagtctgggggtcagttttgat
gtgatccagcaggcctcgttggaggacatgatgtcaggaaaccaaggagccagtgctgtc
gctagctacgatgagactgctctctgctccaacaccttcaggatcttgaagagcatggtg
gtcggatgggtcagggagatcactcagtaccacaacgtgtacgcagacaaccaggtgatg
cacttctaccgctggctgcgctccccgagctctctgctctatgatcctgcactgcaccgc
accctgcacaacatgatgaagaaggtgttcctacagttggttgcagaattcaaacgtctt
ggctcaactgtggtgtatggaaacttcaacaggatgatcttgtgtactaaaaaacgaagg
atagacgatgcaatcggctacgtagagtacatcaccaacagcatccactcaagagaaatc
ttccactctttgtccatgtccttctcccgatgttgggagttcctgatgtggatggacccg
gccaactatggcggtgtgaagggcaaactgccctccagcgtcctctacggagaggaggga
gccaaacagaggaaaaacaaacgagagggtgacgaggacggcagtgaggatgaagacgag
gatgaagccggtgttgaggaagatgatggtgatggggagacagatgaggtggaggaactg
attgagagcaactggaacatcatgcagtatctgccccaaacagcctcctgtcagcaatac
ttccttatgattgtgtcagcctacattgcagcagtctaccacagcatgaaagaggagctg
agacgtaacgctcctggggcaacgccggtcaagagacgtggaggcagccaggcttcccag
caggcagtgggagatttgagtgctcttcctggaatgatctccttctcccaggaatatgtg
tccagcgagctgacacagaactttttcaccatcactcaaaaaatccagaagaaggtgacc
ggtaccaggagtgtcacccagccttcagagatgttccccatcctgcccggatcccacctg
ccactcaacaacccagcactggagtttattaaatatgtctgccaggtcctttcactggat
gccaacatagtgaaccaggtgaacaagctaaagagagacctcctgcgtctcgtggacgtc
ggagagttttcagatgacgcccagttccgtgacccttgtaactcctacatcctgccagag
gtcatctgccaccactgcaatttctgtcgtgatctcgacctctgcaaagacccgtctgtg
gcgcaggatgggtctgtcctgcctcagtggttctgctccaactgccaggcccagtacgag
accgagactattgagatggctctggtagaggccctgcaaaagaaactaatgagctacacg
ctgcaggatctggtgtgcaccaaatgtaaaggggttaaggaagcaaacatgcccctctac
tgcggatgtgctggagactttgacctcagtttctcagccaagagcttctctgagcagatc
acggtgtttcggaacatagcatcccactacagcatgagcttcctggaggagaccattgac
tggctgcttgtgatgagtccacagatcagccagagcgctcgctaa

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