KEGG   Lates calcarifer (barramundi perch): 108878173
Entry
108878173         CDS       T04895                                 
Name
(RefSeq) transitional endoplasmic reticulum ATPase
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04137  Mitophagy - animal
lcf04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    108878173
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    108878173
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcf03019]
    108878173
   03009 Ribosome biogenesis [BR:lcf03009]
    108878173
   04131 Membrane trafficking [BR:lcf04131]
    108878173
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lcf04147]
    108878173
Messenger RNA biogenesis [BR:lcf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     108878173
Ribosome biogenesis [BR:lcf03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    108878173
Membrane trafficking [BR:lcf04131]
 SNARE
  SNARE associated proteins
   Others
    108878173
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    108878173
Exosome [BR:lcf04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   108878173
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 CDC48_2 AAA_5 AAA_33 AAA_2 AAA_22 TIP49 AAA_14 NPHP3_N Vps4_C RNA_helicase AAA_28 nSTAND3 Parvo_NS1 Mg_chelatase AAA_17 IstB_IS21 ATPase_2 AAA_18 AAA_7 ATPase ABC_tran DUF815 AAA_24 NB-ARC TsaE ResIII NACHT Sigma54_activat Viral_helicase1 SLFN-g3_helicase KAP_NTPase Zot DUF3944
Other DBs
NCBI-GeneID: 108878173
NCBI-ProteinID: XP_018524097
UniProt: A0A4W6G9D1
LinkDB
Position
LG13:11152029..11160316
AA seq 806 aa
MASGGESKNDDLATAILKQKNRPNRLIVDESINEDNSVVSLSQTKMDELQLFRGDTVLMK
GKKRRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIRREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFKWALSQSNPSALRETVVEVPNITWEDIG
GLDDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRISILKAN
LRKSPISKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSSATGG
SGPSHGSGGTGSGPVFNEDNDDDLYG
NT seq 2421 nt   +upstreamnt  +downstreamnt
atggcctcgggaggggaatccaaaaatgatgatctagccactgcaattctgaaacagaag
aacagacctaacagactgattgttgatgaatccatcaatgaagacaacagtgtggtctct
ctctctcagaccaagatggatgagctgcagctcttccgtggagacacagttctgatgaag
gggaagaagaggcgggagactgtgtgcatcgtgttgtctgatgacacctgttctgatgaa
aaggttcgcatgaacagggtggtccgcaacaatctgagggtccgtctgggtgatgtcatc
agcattcagccatgtcctgatgtcaagtatggaaagaggatccacgtcctcccgatagat
gacacagtagaaggaattactggcaacctgtttgaggtctacctgaagccatacttctta
gaggcttacaggccaatccgcaaaggtgatattttcctggtcagaggcggcatgcgtgct
gtggagttcaaggtggtggagaccgatccctccccctactgcatcgttgctcctgataca
gtcatccactgtgagggagaaccaatcaggagagaggatgaggaagagtccctgaacgag
gtgggctatgatgacattggaggagtgaggaagcagttagctcagatcaaagagatggtg
gagctgcctcttagacaccctgcactgttcaaggccataggagtcaagcccccacgtgga
atcctgctgtatggaccccctggaactggaaagaccttgattgccagagctgtggccaat
gaaactggagcattcttcttcttgatcaatggtcctgagatcatgagcaagctggccgga
gagagcgagagtaacctgagaaaggcctttgaggaagcagagaagaacgctcctgccatc
atctttatcgatgagcttgacgcaattgctcctaagagagagaagacccatggagaggtg
gagaggcgcattgtttctcagctgctgactcttatggacggcctgaaacagagagctcat
gtcattgtcatggctgccaccaacagaccaaacagcatcgacccagctctcaggagattt
ggacgttttgacagggaagtggacattggcatccctgatgccaccggcagactggagatt
cttcagattcacactaagaacatgaagctggcagatgatgttgacttggaacaggtagcc
aacgagacccacggacatgtgggtgcagatctggctgccctctgctctgaggctgccctg
caggccatcaggaagaagatggacctgattgaccttgaggatgagaccattgatgctgaa
gtcatgaattcacttgctgtcaccatggatgacttcaagtgggccctgagccagagcaac
ccatcagcactgagggagacagttgttgaggtccccaacatcacctgggaggatatcgga
ggtctggatgatgtcaagagggagctgcaggagttggttcagtacccagtggagcaccca
gacaagttcctcaagtttggcatgaccccatccaagggtgtgctgttctatggtcctcct
ggttgtggtaagactctgctggccaaagccatcgccaatgagtgccaggcaaatttcatc
tccatcaaaggacccgagctgctcaccatgtggtttggagagtctgaggccaacgtcaga
gagatctttgacaaggctcgtcaagcagccccatgcgttctcttctttgatgagctggac
tccatagccaaggcccgtggtggcaacgtgggagatggcggtggagcggccgaccgtgtc
atcaaccagatcctgaccgagatggacggaatgtccagcaagaagaacgtcttcatcatc
ggagccacaaacagaccagacatcatcgaccctgccatcctgagacctggccgtctggat
cagctcatctacatccccctgcctgacgagaagagcaggatcagcatcctgaaggccaac
ctccgcaagagtcccatcagcaaggatgtggatttggacttcctggccaagatgaccaac
ggcttctccggagctgaccttacagagatatgccagcgggcgtgtaagctggccatcaga
gagagcatcgagaatgagatccgcagggagagggagaggcagaccaacccctcagctatg
gaagttgaagaggatgatcctgttccagagatcaggaaggaccattttgaagaggcaatg
cgatttgcccgtcgctccgtcagtgacaatgacattcgcaaatacgagatgtttgctcag
acactgcagcagagccgcggctttggcagcttcaggtttccctccagtgccacaggcggc
agcggtccaagccatggctcaggaggaaccggcagcggtccagtgttcaatgaagataac
gacgacgacctttatggataa

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