Lates calcarifer (barramundi perch): 108878196
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Entry
108878196 CDS
T04895
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 30 isoform X1
KO
K11851
ubiquitin carboxyl-terminal hydrolase 30 [EC:
3.4.19.12
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
108878196
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lcf01002
]
108878196
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108878196
04121 Ubiquitin system [BR:
lcf04121
]
108878196
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108878196
Peptidases and inhibitors [BR:
lcf01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
108878196
Membrane trafficking [BR:
lcf04131
]
Autophagy
Mitophagy
Other mitophagy associated proteins
108878196
Ubiquitin system [BR:
lcf04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108878196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
DUF5700
Motif
Other DBs
NCBI-GeneID:
108878196
NCBI-ProteinID:
XP_018524157
UniProt:
A0A4W6G9T5
LinkDB
All DBs
Position
LG13:10571550..10577756
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AA seq
508 aa
AA seq
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MLRYRPETSDKLVGEFLGTGPVVRNKMIKNWGVIGGIAAAIAAGVYVLWGPITERKKRKR
GMVPGLLNLGNTCFLNSLLQGLAACPSFIRWLEKFSGSPTIQSCKDNQLSTTLLQLLKAL
SSDEPGEEDVLDAGCLLDVLRLYRWHISSFEEQDAHELFHVLTSSLEEERDRQPKVTHLF
DMQSLESLPDQDEKTMTCRSRAPLHPIPSPWKFQHPFHGRLTSNMSCKRCEQQSPVRYDS
FESLSLSIPLPQWGRPISLDQCLQHFISSETIKEVECENCTKLQQETTVNGQVLESQRTT
FVKQLKLGKLPQCLCIHLQRLTWSSEGTPIKRQEHVQFTEYLSMDRYKHNISTQRSQRIM
CAPKPVKAENSDDVIEKPTANGTDAEHHNNNKPFSNGTCSSLFLHSPGVNPQLGLTYDYS
STEYLFQLTAVLVHHGDMHSGHFVTYRRSPPSPRSSSAFSSSAFSSQWLWVSDDSVRKAS
LHEVLSSNAYMLFYERVQRLNLTLRSEE
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgttgcgctacagacccgagacctccgataagcttgttggagagttccttggcactgga
cccgtagtcagaaacaaaatgattaaaaactggggtgtcattggtgggatagctgctgcg
attgcagctggagtatatgttttgtggggcccaattacagagagaaagaagagaaagaga
ggtatggttcctggtctgttgaacctaggcaacacctgcttcctgaactctttgcttcag
gggctggcagcgtgtccgtccttcatcaggtggctggagaaattttctggttcgcctacg
atccagtcatgcaaagacaaccagctgtccacaactttgcttcagcttctcaaagctctg
tccagtgatgagcctggggaggaagatgtgctggatgctggatgcctcctggatgttctc
agactgtaccggtggcacatcagttcatttgaagagcaggatgcacatgaactttttcat
gtccttacatcttctctggaggaggaacgggatcgccaacccaaagtcactcacttgttt
gacatgcagtctctcgagagcctccctgatcaagatgagaaaactatgacctgcagaagt
cgagctcctcttcatccaataccaagtccatggaagtttcagcatccttttcatggtcgt
ctaacgagcaacatgtcatgcaaacgctgcgaacagcaaagtccagtgcggtatgattca
tttgagagcctctccctgtccatccctttacctcagtggggtcggcctatctctctcgat
cagtgtcttcagcatttcatctcctcagagaccatcaaagaagtggagtgtgaaaactgc
accaagcttcaacaagaaacgacagtaaatgggcaagttctggaaagtcagagaacaaca
tttgttaaacagctaaaactgggaaagctcccccagtgcctctgcatccacttacaaaga
ctgacgtggtccagtgaagggacccccatcaaaagacaggagcatgtgcagtttacagag
tatctatcaatggaccgctacaaacacaacatttccacgcagagaagtcagcggatcatg
tgtgctccaaagcctgtgaaggcagaaaattcagatgatgttattgaaaagcccacagcc
aatggcacggatgcagaacatcacaacaacaacaaacctttttccaatggaacctgttca
tctttatttcttcactctcctggtgtgaacccgcagctcggcctcacatatgactacagt
tctacagagtaccttttccagctcacagccgtgctggttcaccatggtgacatgcactcg
ggacattttgtcacgtaccgccgcagccctccttcaccacgcagctcctcagccttcagc
tcctcagccttcagctcccagtggctttgggtgtcggacgactccgtacgaaaagccagc
ctgcacgaggtgctgtcttccaacgcttacatgctcttctatgagagagtccagaggctg
aacctcactctgcgctcagaggagtga
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