Lates calcarifer (barramundi perch): 108878243
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Entry
108878243 CDS
T04895
Name
(RefSeq) recQ-mediated genome instability protein 1
KO
K10990
RecQ-mediated genome instability protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
108878243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108878243
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
108878243
FA (Fanconi anemia) pathway
108878243
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RMI1_C
RMI1_N_C
RMI1_N_N
Motif
Other DBs
NCBI-GeneID:
108878243
NCBI-ProteinID:
XP_018524246
UniProt:
A0A4W6GCS3
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Position
LG13:8418352..8427882
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AA seq
700 aa
AA seq
DB search
MAPEIQGVVRATQAWLQSSWHVQVPFAWLEACVAWLQEEAGGAGRLSQQQINQQALDQWL
LTDLRDLDYPVLPEGLAVAQKTELSGTFCVQVDSLLDISQPAYGQLQKWKGTECANDEVS
AVTQTTQRPWEARPTRMLLLQVTDGVQSLEAMEYQPIPALSASLRPGAKLQLQGQMVCRL
GMLLLGPSNIKVLGGEVEDLVDRNNQGRVLCRTLGLPEEQQQEGEGAHSAPQQGNQEVED
LELDDAELLASLEPQEEVGRVQVGSVRDSGYGTLSETSCQLSRSSSVRSPVSAASSRSGL
THNSRRGPVQEQEDSDLFDTIPSEHEIQHEIQDHSMAEEDFPDEDFDDLPLDELDSMIFQ
QTANVTAQFDSSHRSTPQNSCRITGNPNSLGRATKPQTAQFEQHTLNGSGSLLGSGNSRS
VTQKRDYQGCTKGAAATSTALEPSHKLEFITNDESDFMDEDMDCFLEEEETYGAKPGRTG
RPDLLSVQQGPQRDGENATNKTESSASSYTHTSKSSRSGTDLRLQGQSYTSNATDSNRLS
TKKDPQSDSTVPVLTLTSPPFTYLCLLEELMSKPNPHTTEVRVKAFIVTLLGKLSSNNGV
WSVCATISDGTGYLDVELSNKVLMGLLGFSVAEKAALKRDPARRGELDAGMRRCQEELVD
MCCVMTMAVKPDGKAVVTKADQVTEKVLQELEQRVRDRRK
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcccctgagatccagggagtggtacgtgccacccaagcctggctgcagtcctcctgg
catgtccaagtgccctttgcatggctggaagcctgcgtggcgtggctacaggaagaggca
gggggggcaggtcgtctgtcacagcagcaaatcaaccaacaggcgctggaccaatggctg
ttgacagatctgagggacctggactaccctgttctccctgaagggcttgctgtggctcag
aagaccgaactcagcggcaccttctgtgtccaggttgactcattactggacatcagtcag
cctgcgtatggtcagctgcagaagtggaagggcacagagtgtgccaacgatgaagtgtct
gctgtcacacagaccacccagaggccctgggaagccagaccaacccgtatgctgctactg
caggtgacagatggagtccagagcttggaggccatggagtatcagcctatccctgcactc
agcgcatcactcaggcctggtgcaaagctgcagttgcaaggacagatggtttgcagactt
ggaatgctgctgttagggccgtctaacatcaaggttctgggtggtgaggtggaggacttg
gtggacaggaataaccagggccgggtgctgtgtcggacgctgggacttcctgaggagcag
cagcaggagggggagggggcccactctgcaccacaacaaggaaaccaggaagtggaagac
ctggagctcgatgacgcagaattgttggccagcctggagccccaggaggaggtgggaagg
gttcaggttgggtctgttcgagacagcggctacgggacactcagtgagacctcctgtcag
ctctccagaagctcctctgtcaggagccctgtctcggcagcctcatctaggagtggtttg
acccacaacagcagacgtggtccagtccaagagcaagaggattctgatctctttgacacc
ataccttccgaacatgagattcaacatgagatccaagatcacagcatggcagaggaagac
tttcctgatgaagactttgatgatcttcccctggacgagttggacagcatgatttttcag
caaactgcaaatgttactgcgcagtttgacagcagtcacagaagcacaccacaaaatagc
tgcagaataacaggaaatcctaacagtttgggcagagcaacaaaaccccagactgctcag
tttgagcagcacactttaaatggctcggggtcattgttgggttctggaaactccagatcc
gtcacacagaaaagagactatcaaggctgtactaaaggagctgcagcgacctccacagct
ttagagccatcgcacaaattagaatttataaccaatgacgagagcgattttatggatgag
gacatggactgctttcttgaagaggaagaaacctatggagcaaaacctggcaggactgga
aggccagatctgctctctgttcaacaagggcctcaaagagacggagagaatgctaccaac
aaaacagaaagttcagcctccagttatacacataccagcaaatcatcaagaagcggaact
gatctcagacttcaggggcaaagttacacctcaaacgctacagactccaacagactatct
actaaaaaagatccacagagtgacagcacagtccctgttctcactctaacctctccacct
tttacatacttgtgtctgcttgaagagctaatgtccaaaccaaacccccacaccaccgaa
gtccgtgtcaaagctttcatcgtgactctcttggggaaactgagcagcaacaatggcgtt
tggagtgtctgcgcaacgatatctgatggaacaggttacctggacgtggagttgtccaac
aaggttttgatgggtctgctgggcttctctgtggcagagaaggcggccctgaagcgcgac
cccgcccggagaggtgagcttgatgccgggatgaggaggtgtcaggaagagctggtggac
atgtgctgtgttatgaccatggcagtaaaaccagacggaaaagctgtggttaccaaggca
gaccaggtcactgagaaagtactccaggagctggagcagagggtgagagacaggagaaaa
taa
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