Lates calcarifer (barramundi perch): 108878255
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Entry
108878255 CDS
T04895
Name
(RefSeq) hepatocyte nuclear factor 1-alpha
KO
K08036
transcription factor 1, hepatocyte nuclear factor 1-alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108878255
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
108878255
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1B_C
HNF-1_N
HNF-1A_C
Homeodomain
Telethonin
HTH_37
HTH_5
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
108878255
NCBI-ProteinID:
XP_018524271
UniProt:
A0A4W6F3Z5
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Position
LG13:17558461..17563492
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AA seq
562 aa
AA seq
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MEGEETARAAKARPSRLTALQEQLIWALLGSGLSREVLVQALGELEQDRVTAGVEKGERG
DGESSEEGEMDFPPPIFRELEKLTPEEAAKLRAEVDRLLQEDPWHVAKMVKSYMQQHNLP
QREVVESTGLNQSHLSQHLNKGTPMKNQKRAALYSWYVKKQCEISQQFTNAKHGLATVEE
QGEDTRKGRRNRFKWGPASLQILFHAYERQKNPSKEEREGLVEECNRAECLQRGVSPSQL
AGLGSNLVTEVRVYNWFANRRKEEAFRHKLAHDTPYTNQSASSSHLNLQPSPEHGVKHSQ
QILCDTVSSARGSGGERVGRLVVSPVQLEPSHTLLETHNPKPVSSGGPLPPVSTLTSLHS
LSASPASSQGLIMASLPSVMGLGESSLLIGLASTQPQTVPVINNVGGGFTTLQPISFQQQ
LHASPQQPISQQLQSHMGASPFMATMAQLPCHMYNKSDSPQYHSSSLLSQAMVITDSSSL
GTLTSLTAVRQILTADSEEQADPPLQEESLHLQPQTPVPASSESLELYPASQSTDSHQSH
LLSPSPTDISSYIPTQMVSTAQ
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggagggagaggagacggccagggcagccaaggcgaggccgagccgtctgactgccctt
caggagcagctgatctgggccctgctgggatctggactgtcccgggaagtactcgtccaa
gccctgggggaactggaacaagacagggtgaccgctggcgtcgagaagggagagaggggg
gatggagagagctccgaggaaggagaaatggatttcccaccgcctatattccgagagctg
gagaagctcaccccagaggaggcagccaaactgagggctgaagttgaccggctgctgcag
gaggatccctggcatgttgcaaaaatggtgaaaagctacatgcaacagcacaacctccct
cagagagaggtggtggagtccacgggactcaaccagtcccacctctctcagcacctcaac
aaaggcacacccatgaagaaccagaagagagctgctctgtacagctggtacgtcaagaag
cagtgcgagatcagccagcagtttaccaatgccaaacacgggcttgcaacagtggaggaa
cagggagaagatactaggaaaggacggaggaacaggttcaagtggggtccagcatccctg
cagatccttttccatgcctacgaacgacagaagaaccccagcaaggaggagagagagggg
ttggtggaggaatgtaacagggcagagtgtctgcagaggggagtgtccccctctcagctt
gctggactgggctccaacctggttactgaagttcgggtgtacaactggttcgccaaccgc
cgcaaagaggaggccttccgtcacaaactggcccatgatacaccttacaccaaccaatct
gcctcatcttctcacctcaaccttcaaccaagtcctgaacatggtgtgaaacacagccag
caaatcctgtgtgacactgtgagctcagccagaggcagtggaggagagagagtgggacgt
cttgtggttagccctgtccagcttgagcccagccacacactcctcgagacccataaccca
aagccggtgtccagtggtggcccactgcccccagtaagcactctgacctccctacacagt
ctgtctgcctcccctgcatcctcacagggcctcatcatggcctcactgcccagcgtcatg
ggtctgggagagtcatcgcttctcattggtttagcctccacgcagcctcagactgtacct
gtcataaacaacgtcggaggcggtttcacaactctccagccaatctcattccagcagcag
cttcacgcctctccacagcagccaatatcacagcagcttcagagtcacatgggtgccagt
ccgttcatggcaaccatggcacagctgccatgtcacatgtacaacaagtcagattcgccc
cagtaccattcgtccagtctgttgtcacaagccatggtcatcactgacagcagcagcctg
gggactctgaccagcctcactgctgtcagacagattctaacagcagattctgaggaacag
gcggacccacctttacaggaagagtctctgcacctgcagccacaaacacctgtgccagca
tcctctgagagtttggagctatatcctgcctctcagtcaacagacagccatcagtctcac
ctcctctcaccttcaccaacagacatcagttcctacattcctacacaaatggtctctact
gcacagtag
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