Lates calcarifer (barramundi perch): 108878256
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Entry
108878256 CDS
T04895
Symbol
msi1b
Name
(RefSeq) RNA-binding protein Musashi homolog 1b isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108878256 (msi1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108878256 (msi1b)
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108878256 (msi1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
RRM_PARP14_1
Motif
Other DBs
NCBI-GeneID:
108878256
NCBI-ProteinID:
XP_018524272
UniProt:
A0AAJ7PGW9
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Position
LG13:complement(17533526..17556753)
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AA seq
477 aa
AA seq
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MALYCIWKVSACTKETPKLQTSPSKLCSKLWILGRAASILYPSGSRAVVDTSFDGGAACH
GGGMRARQQRGLTGGGGGVCPSLHLARSPLCHPGPNPPSSSHSLSACFPARLGPDAHGTH
SHTQRGHGMETEGSQSSLSTTDSPHDPCKMFIGGLSWQTTQEGLKEYFCKYGEVKECMVM
RDPVTKRSRGFGFVTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRAQPKLVTRTKKIF
VGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFH
EINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQTATYTSRSY
AGITPGYTYQFPEFHLERTPLLTSPHPPELTAIPLTAYGPMAAAAAAAAVVRGSTPSRSA
GFLGTSSPGPMADLYGTASQESAVSSYLSAASPAPSTGFSHSLGGPLIATAFTNGYH
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggcattatactgtatttggaaggtgtcggcatgcacaaaagagacacctaaacttcag
acttcaccttccaaactttgctccaaactctggatcttgggtagggcggcatccatttta
taccccagcggaagtcgtgccgtcgtcgacaccagctttgacggtggagccgcgtgccac
ggtggtgggatgagagcgagacagcagcggggactgactggaggaggaggtggagtctgt
cccagcctgcatctggcccgctcccctctctgtcaccccgggccaaacccgcccagctcc
tctcactcactctccgcctgttttcccgcacgcctcggcccggacgcacacggcactcac
tcacacacacagcgaggacacggaatggagacggaagggagccagagcagcctgtccacc
acggactcccctcacgacccctgcaaaatgttcataggtggactcagctggcaaacaaca
caagagggcctgaaggagtacttctgcaagtacggcgaggtgaaagagtgtatggtgatg
cgagatccagttactaagcgctcgagagggttcggattcgtcacctttgttgatcaggcc
ggcgtggataaagttttggcccaaaccaggcacgagttggactccaaaacaatcgatcca
aaggttgcattccctcgtagagctcagcccaagttggtgactcgaaccaagaagatcttt
gtgggaggcctgtcagtgaacacaactatcgaggatgtcaagcagtactttgaccagttt
gggaaggtcgacgacgccatgctcatgttcgacaagaccaccaacaggcacagagggttt
ggctttgtgacatttgagaacgaggatgtggtggagaaagtctgcgagatccacttccat
gagatcaacaacaaaatggtggagtgcaagaaagctcagcccaaggaggtgatgtccccc
acgggctcggccagggggcgctctcgggtgatgccctatgggatggacgccttcatgctg
ggcattggtatgctgggttacccaggcttccagaccgccacctacaccagccggagctac
gctggcatcactcctggatacacctaccagttccctgagttccacttagagaggactccc
cttctgacttcaccccacccccctgagctcacagccattcctctcactgcatatggacca
atggcagcagcagcggcagcagcggcagtggtcagaggctctaccccgtctcgctcagct
ggatttttaggtacgagcagcccggggccgatggcagatctgtatggaacggccagtcag
gagtcagctgtcagcagttacctcagcgctgcgagccccgccccaagcactggattcagc
catagtttggggggccctttgatcgccacggccttcactaacggatatcactga
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