Lates calcarifer (barramundi perch): 108878314
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Entry
108878314 CDS
T04895
Name
(RefSeq) zinc finger RNA-binding protein
KO
K13203
zinc finger RNA-binding protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108878314
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
108878314
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DZF_N
DZF_C
zf-met
zf-C2H2_jaz
zf-U1
Motif
Other DBs
NCBI-GeneID:
108878314
NCBI-ProteinID:
XP_018524403
UniProt:
A0AAJ7LKU9
LinkDB
All DBs
Position
LG13:21458277..21484650
Genome browser
AA seq
1074 aa
AA seq
DB search
MIPICPVVSFTYVPSRLGEDAKMATGNYFGFTHGAAAQYSQQPAAGVAYTHPTTVASYTV
HQAPVAAHTVAAAYAPTAATVAVARPAPVAVAAATAAAYGGYQPTHAATDYGYPQRQPEV
PPPPPPVTSQNYQDSYSYVRSTAPAVAYDSKQYYQQPTATAAVAAAQPQPSVADSYYQTA
PKPGYSQGVTSYTQSQQTRQVTVIKPAAPSPASSTFSIYPVTSTVQPVAAAASVVPSYSQ
SPTYSTNAVTYSGTSYSGYEAAVYSAASSYYQQQQQQKQAVAAVAATAAWTGNSFTKKPP
FQSKQLRPKQPPKPPQIHYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKVSQSSSSSGS
GGGVLARNAQNQLRCELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPSTEPSMVT
QTSSSTTAAPSKTTTATLNSSSSTSSLCVAASSSPATSSSPPYLKPVNIVSSGVAGVKNS
LANNLSAANSASAGKKVSTPKINFVGGNKLQTTVKMDEARAEAKVESSKPATPSSGSQDP
KTEVSDSLSTSALAGLQSDVQPVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHL
KGRRHRLQYKKKVNPDLQVEVKPSIRARKIQEEKMRKQMQKEEYWRRREEEERWRMEMRR
YEEDMYWRRMEEEQHHWDERRRLPDGGYPQGPPGPPGLLGVRPGMPGLQPQGPVPPRRPD
SSDDRYVMTKHAAIYPSEDELQSIQKIVSITERALKLVSDIITDQDKAKEEDKEKKESCK
DRALKGVMRVGVLAKGLLLRGDKNVNLVLLCSEKPTKGLLTRIVEHLPKQLTMVTPEKYE
VKGSIQEAAIILTSCTEPKMQVTITLTSPVIREENGRDGDVTSGMVKDPADVLDRQKCLD
ALAALRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSPFPGWAMELLVEKAISSASAP
LSPGDALRRVFECISSGILLPGGPGLVDPCEKKPVDTLTPMGEQQREDITSSAQFALRLL
AFRQIHKVLGMDPLPQINPRFNIRNSRKRRRDNSDGTDSFEGEGKKDKKDYDSF
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgattcccatatgtcctgtagtctccttcacctatgtgcccagccggcttggtgaagat
gccaaaatggctaccggcaattactttggatttacccatggcgctgccgcccagtacagc
cagcagccagctgccggggtagcatacacacatcccaccacagtggccagttacacagtt
catcaagcacctgtggcggcacacactgtggcagcagcctacgctcccaccgcagccaca
gtagctgtagctaggcctgcaccagttgccgtggcagctgctactgctgcagcttacgga
ggataccagccaacccatgctgccactgactatggctaccctcagcgccagcctgaagtc
cctccaccaccaccacccgttacctctcagaactaccaggactcctactcctatgtccgt
tccacagctccagctgtagcttatgacagtaagcagtattatcaacagcccactgctaca
gcagctgttgctgctgcacagccacaacccagtgtggcagattcctactaccaaacggct
cctaaaccaggatatagccagggggtaacatcatacacccagagccagcagactcgacag
gtgaccgtgataaagccagctgctcccagtccagcctcttccacgttctccatctaccct
gtgacctccactgtccagcctgtggctgctgccgcctctgtggtcccgtcttactcccaa
agcccaacctacagcacaaatgctgtcacctactctggaacttcatactcaggctatgaa
gcagcagtttactcagcagcctccagctactaccagcagcagcagcagcagaagcaggca
gtagcagctgtagcagcaacagcagcatggacagggaactctttcaccaagaaaccaccc
tttcagagtaaacagcttcggcccaagcagccgccaaaaccccctcagatccactattgt
gatgtctgtaagatcagctgtgctggcccacagacttacaaggaacatttggaaggacag
aaacacaagaagaaggaagcagcattgaaggtttcccagagcagcagcagcagtggtagt
ggtggaggggtgctggcccgcaatgctcagaaccagcttcgctgtgaactttgtgatgtt
tcctgcactggggccgatgcctatgctgcccatatccgcggagcaaagcaccagaaggtt
gtgaagcttcataccaaacttggtaagcccattccatctacagagcccagtatggtcact
cagacatcgtcctccactacagctgcccccagcaagaccaccacagccaccctgaacagt
tccagcagcaccagctctctgtgtgtggctgcctcctcctcccctgccaccagctccagt
cctccctaccttaaacctgtcaacatagtcagcagtggtgttgcaggtgtcaagaactca
ttagccaataacctctctgctgccaactctgcctcagctgggaagaaagtcagcaccccc
aagatcaattttgtcggtggaaataaattacagaccacagtgaagatggatgaggccaga
gcagaggccaaagtggagtcctctaagcctgcaacaccctcatcaggttctcaggacccc
aagactgaagtttcagattctctgtccacatcagccctggccggactgcagagtgatgtc
cagcctgtcggtcatgactatgttgaggaagtccgaaacgatgaaggcaaagtcatccgc
ttccactgcaagctgtgtgaatgtagtttcaatgatccaaatgcaaaggaaatgcatcta
aaaggtcgtaggcatcgactgcagtacaagaaaaaggtgaacccagatctgcaggtggag
gtcaagcccagcatccgagccagaaagattcaggaggagaagatgagaaagcagatgcag
aaagaggagtactggagaagaagagaggaggaggagcgctggagaatggagatgcggcgt
tatgaagaagacatgtactggagacgtatggaggaggagcagcaccactgggatgagcga
cgtcgtttaccagacggagggtatccacaagggccccctggccctcctggtctacttgga
gtccggcctggcatgcctggtctgcagcctcagggtcccgtgcccccacgtcggcctgat
tcttcagacgatcgctatgtcatgaccaagcatgcagccatctacccctcagaggatgag
ctccagtccattcagaagattgtgtcaatcacagaacgtgccctcaaactggtctcggac
ataattacagaccaggacaaggccaaggaagaagacaaagagaagaaagaatcctgtaaa
gacagagccctgaagggagtgatgagggtcggagtcctggccaaaggcttgcttcttcgt
ggagacaaaaatgtcaacctagtcctactctgctctgagaagcccaccaagggcctcctg
acccgcattgtggagcacctccccaaacaactaacaatggtcacaccagaaaaatatgag
gtcaagggatctatccaagaagcggccatcattctgacatcctgtaccgagccaaagatg
caagtgacaatcacattgacttcacctgtcatcagagaggaaaatggccgggacggagat
gtaacctcgggtatggtgaaagacccagcggacgtcttggacaggcaaaaatgccttgac
gctctggctgctctgcgccacgctaagtggttccaggctagagctaatggtcttcagtcc
tgtgtgatcatcatccgaatcttgcgagacctctgtcagagagttcctacgtggtcgccc
ttcccgggatgggccatggagctgttggtggagaaggccatcagcagcgcctctgccccc
ctcagccccggtgatgcattaagacgggtctttgaatgtatttcttctgggattttactc
cctggtggaccaggactggtggatccctgtgaaaagaagcctgtggacaccctgacaccc
atgggagagcaacagagagaggacatcacctcaagtgcccaatttgctctgaggctgctg
gccttccgtcagatccataaagttttgggcatggaccctctgccacaaataaaccctcgc
ttcaacatccgcaacagccgcaagcgtcgccgtgacaacagcgatggaacagacagcttt
gagggcgaaggcaaaaaagacaagaaagattatgatagtttctaa
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