Lates calcarifer (barramundi perch): 108878321
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Entry
108878321 CDS
T04895
Name
(RefSeq) ATP-binding cassette sub-family A member 2 isoform X1
KO
K05642
ATP-binding cassette, subfamily A (ABC1), member 2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf02010
ABC transporters
lcf04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
108878321
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
108878321
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108878321
Transporters [BR:
lcf02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
108878321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
Motif
Other DBs
NCBI-GeneID:
108878321
NCBI-ProteinID:
XP_018524417
UniProt:
A0AAJ7PHI2
LinkDB
All DBs
Position
LG13:22948687..23031632
Genome browser
AA seq
2534 aa
AA seq
DB search
MGFLHQLHLLLWKNISLKRRGPWVLAFEIFIPLVLFFILLGLRQKKPAIPVKEAFYSAAP
LTSAGIIPIMQSLCPDGQRDEFGFLQYKNSTVTQLLERISEVVEQNRLFTSDRPGLGQEL
ETLQQHLESLSSTPLPPDYKFNKSQGFTLASVLKSQSAFHQFLVKNLSLSNSTTSLLLNI
PVSVREVYNLIFGTSLRDGGGAQSWIQGTKDSRQKPGDRVLHLEEKLLGDVHSLDGGLIY
KALWDSTKAAHRQALLKLVSQALGLTEATGNKGNDQQGLKEVEGILLTGAMLETLTCGEG
GTSELSNILLVPEKQQPVLQAYRSALCSGGEGQRSERFRQMSVELREQINTQSVTEKLHL
EQPSSWVPLSQSHLGALLKDLADVERLLKDVDLLSGLARLLPKGACSGRSPASPTNMTWP
LNATTWGPNTTDIPREEEEKGSEGGGRVRGGKGKEEAENPHSQFSAFVQLWAGLQPILCG
NNRIIEPEALKQGNMSSLGFTSKEQRNLGLLVHLMTTNPKILYSPIGSQVDKVIQKANET
FAFVGNVTHYTRVWLNISAQLRTFLEEGQLHSHLVWLQQLSSELQQHPELLNGTDTELVQ
GLMEGNYSLPNTSTLLEQLDTIDNAACGWTHFMSKVSVDVFKGFPDEDSIVNYTLNQAYQ
DNVSVFASVIFQTNKDGSLPPHVLYKIRQNSSFTEKTNEIRRAYWRPGPNTGGKFYFLYG
FVWIQDMIERAIINTFVGHDVVEPGNYVQMFPYPCYTRDDFLFVIEHMMPLCMVISWVYS
VAMMIQHIVAEKEHRLKEVMKMMGLNNAVHWVAWFITGFVQLSISVTALTAILKYGRVLL
HSNPFIIWLFLTIYAVATIMFCFLVSVIYSKAKLASACGGIIYFLSYVPYMYVAIREEVA
HDKITAFEKCIASLMSTTAFGLGSKYFALYEVAGVGIQWRTISQSPVEGDDFNLGLSMMM
LIIDASVYGVLTWYIEAVHPGMYGLPRPWYFPLQRSYWSGSGRVETWDWPWCGGGAARLS
VMEEDQACAMDQRRSEEMRGIEEEPSHLPLVVCIDKLTKVYKTGSKLALNKLSLNLHENQ
VVSFLGHNGAGKTTTMSILTGLFPPTSGSATIYGHDIRTEMERIRQNLGMCPQHNVLFDK
LSVEEHLWFYSRLKGMAEEDIRKEMDKMIVDLELSNKRHSLVQTLSGGMKRKLSVAIAFV
GGSRAVILDEPTAGVDPYARRAIWDLILKYKQGRTILLSTHHMDEADLLGDRIAIISHGK
LKCCGSPLFLKSTYGDGYKLTLVKKQSEGRGQGSLLELPSSLSPSSSLSPCSEARVTQFI
RQFVASCLLVSDSNTELSYVLPSEAVKKGCFERLFQALEQSLDSLALTSFGVMDTTLEEV
FLKVSEEDQSLENSDAGETSPVPPDMKGSPGGSSVGKSSVGSGGQGGSQGETGPSVESEK
LEVELSNLVMCSRMSQSQSSLKSSSSIGSVRGDEGGLYADYYGDYCPLFDNGQESDSASL
RGHAENPLSPEPKVQEGQGSFKLEGWWLKLSQFHGLIVKRFHCAKRNTKGLFSQILLPAF
FVCVAMTVALSVPEIGDLPPLILSPSQYHNYTQPRGNFIPYANEDRPQYRSKLLPDASPQ
VIINTLRLPSGVGATCVLKTPFNSTLDQLAQTLNPSANNSKTLAARYFDSMCMDSFTQGV
PLSNFVPPPPSPAPSDDPDPRFEDGLWNFTVAPPTTVHEPVTSPPTLPLSIHEPVRCTCS
MQGTGFSCPSGVGGRPPLMKVVTGDILVDITGRNVSEYLLFTSDRLRLHRYGGLTVGNIQ
KSIPASFGRKIPPMVRKIAVRGAAQVLYNNKGYHSMPTYLNVLNNAILRANLPASKGNPA
AYGITLTNHPMNRTSASLSLDYLLQGTDVVIAIFIIVAMSFVPASFVVFLVAEKSTKAKH
LQFVSGCDPVIYWLANYIWDMLNYLVPATCCVIILFVFDLPAYTSPTNFPAVLSLFLLYG
WSITPIMYPASFWFEVPSTAYVFLIVINLFIGITATVATFLLQLFEHDKDLKRVNSYLKS
CFLIFPNYNLGHGLMEMAYNEYINEYYAKIGQFDKMKSPFEWDIVTRGLVAMTFEGFVGF
LITILCQYNFLRKPLRVPVSCQPIDDDDVDVACERRRVLRGDADNDMLKIENLTKVYKSR
KMGRILAVDRLCLGVRPGECFGLLGVNGAGKTTTFKMLTGDECTTGGEAFINGNSILKDL
LHVQQSIGYCPQFDALFDDLTAREHLELYTRLRGIPWKDQERVVQWALEKLELSKYADKP
AGTYSGGNKRKLSTAIALIGYPSLIFLDEPTTGMDPKARRFLWNLILDIIKTGRSVVLTS
HSMEECEALCTRLGIMVNGRFKCLGSIQHLKNRFGDGYMITVRTKSSSNVKEVVRFFNRN
FPEAVLKERHHTKVQYQLKSEWISLAQVFSKMEQVVEVLGIEDYSVSQTTLDNVFVNFAK
KQSDNLEQQEVLPPGGAQSPLQHILNLLKSRPANTELNALISEAPEELESDDDEGLISFE
EERVQLSFNTDTLC
NT seq
7605 nt
NT seq
+upstream
nt +downstream
nt
atgggattcctgcaccagctccatctcctgctgtggaagaacatctctctgaagaggagg
ggaccgtgggtgctggcctttgagatcttcatcccactggtcctcttcttcatccttctg
ggtcttaggcagaagaagccagccattcctgtcaaggaagccttttacagcgcagcccca
ctcacctcagctggcatcattcccatcatgcagtcgttgtgcccagatggacaaagggat
gaatttggtttcctgcagtacaagaactccaccgtgacccagctgctggaacggatcagt
gaagtggttgaacaaaatcgacttttcacgtctgaccgacctggtttaggtcaagagttg
gagaccctgcagcagcacctggagagtctcagctccacccctttaccaccagactacaag
ttcaacaagagccaaggcttcacactggccagtgtgctgaagagtcagtcggctttccat
cagttcctggtcaagaacctttctctctccaactccacaaccagcttgctgctcaacatc
ccagtcagcgtcagagaggtgtacaatcttatctttggtacatctctcagagatggggga
ggggcccaaagttggattcaggggacaaaagacagcagacaaaaacctggagatagagtt
cttcatctggaggagaagctgctgggagatgtacacagtctggatggaggtctgatatac
aaagctttatgggactcaacaaaagcagcccacaggcaggctctgctcaaactagtgtcc
caggctttaggcctcactgaagccacaggaaacaagggcaatgaccagcagggcctgaag
gaagtggaggggatcctcttgactggagccatgttggagaccctcacctgtggggaggga
gggaccagtgagctcagtaacatccttttggtgcctgagaagcagcaaccagtgctgcag
gcctaccgcagtgcactgtgcagtggaggggaaggtcaaaggtcagagcgcttcaggcag
atgagcgttgagttgagagagcagatcaacacacagagtgtcactgaaaagcttcacctg
gagcaacccagctcttgggttcctctctctcagtcccacctcggggctttattgaaggac
ctggccgatgtagagaggcttctcaaggatgtggacctgctctctggcctggcccggttg
ttgcccaaaggagcctgtagtggtcgatctccagcctcccctacaaatatgacctggccc
cttaatgccaccacttggggccccaacacaactgacatccccagagaggaggaggagaaa
ggatcagagggaggagggagagtaagaggagggaaagggaaggaggaagcagagaatcct
cattctcagttttcagcatttgtacaactgtgggctggactgcagccgattctgtgcggg
aacaacaggatcattgaaccagaggctttgaagcaagggaatatgagttctttgggattc
accagcaaagaacaaaggaatctgggcttactggttcatttgatgactacaaatcccaag
atcctctactctcccattggttctcaggtggataaagtgattcagaaggcaaatgagaca
tttgcatttgttgggaacgtgacacactacacgcgagtgtggctgaacatctccgcccag
ctcaggacttttctggaggagggccagctgcacagccacctggtgtggctacagcagctg
tcctcagagcttcagcagcaccctgagctgttgaatggtacagacactgagctggtgcag
ggtctgatggaaggaaactacagtcttcctaacacctccaccctgctggaacagctggac
accatagacaatgctgcctgtggctggacacactttatgtctaaggtcagtgtggatgtc
ttcaagggctttccagatgaggacagcattgtcaactacaccctgaatcaggcttaccag
gacaatgtgtctgtgtttgccagtgtgattttccagactaataaagatggctccctgcca
ccccatgttctgtacaaaattagacaaaattccagctttacagagaagaccaatgaaatt
agacgggcctactggcgtcctgggcccaacactgggggaaaattctatttcctctatggt
tttgtttggatccaagatatgatagagagagccatcatcaataccttcgtgggccatgat
gtggtggagcctggtaactacgttcaaatgttcccctacccatgttacaccagagacgat
tttctgtttgtgattgagcacatgatgcctctgtgcatggtgatctcctgggtttactca
gtagccatgatgattcagcacattgtggctgagaaggagcaccggctcaaagaggtgatg
aagatgatgggtttgaacaatgcagtccactgggtagcctggtttatcaccggttttgtc
cagttgtccatctctgtcactgctctgacggccatcttgaagtatggccgggtgttgctc
cacagcaaccccttcatcatttggctcttcctcaccatctacgccgtggccaccatcatg
ttctgttttttggtgtcagtgatctactctaaggccaagctggcctcagcctgcggagga
atcatctacttcctaagctatgtaccctacatgtatgtggccattagggaggaggtggcc
catgataagatcactgcctttgagaagtgtatcgcttctctgatgtccaccacagccttt
ggcctgggctccaagtattttgcactgtatgaagttgcaggtgttggcatccagtggcgg
accattagccagtcaccagttgaaggtgatgactttaacctgggtttgtccatgatgatg
ctcatcatcgatgccagcgtgtatggcgttctcacctggtacatagaggctgtgcatcca
ggaatgtatgggctgccccgtccatggtacttccccctgcagaggtcctattggtcaggc
agtggacgtgttgagacctgggactggccatggtgtggaggcggggctgccaggctcagt
gtgatggaggaggatcaggcttgtgcgatggaccagcgaagatctgaagagatgcggggc
atagaggaggagcccagccacctcccattggtggtgtgtatagacaaactgaccaaggtg
tacaagactggcagcaaactggccctcaacaaactgagcctcaacctccatgaaaaccaa
gtggtttccttcctgggacacaatggcgctggcaagaccacaaccatgtccatcctgaca
ggcttgttcccacccacctctggctctgccactatatatggtcatgacatccgcacagag
atggagcgtattcgtcagaaccttggcatgtgtccccagcacaacgtcctgtttgacaag
ctgagtgtggaggagcacctgtggttctactccagactcaaaggcatggctgaagaagac
attcgcaaggagatggacaagatgattgttgacctagagttatcaaacaagcgtcacagc
ttggtgcagactttgtctggtgggatgaagaggaagttgtctgtggccattgcctttgtt
ggtggctccagggctgtcatcctggatgaacccacagcaggggtggacccctacgcccgc
agggccatttgggacctcatcctcaagtacaaacagggtcgtacaattcttctgtcaacc
caccatatggatgaagcagacctcctgggagatcgcattgccatcatctcacatgggaaa
cttaagtgctgtggctcaccactcttcctgaagagcacctacggagatggatacaaactg
actctggtcaaaaagcagagtgaaggcagaggccagggcagcctgctggagcttccctct
tctctgtctccgtcctcttctctgtcaccttgctcagaggctcgggtcacccagtttatt
cgccagtttgtggcatcctgcctactggtgtctgactccaacactgagctgtcctacgtt
ctgccctccgaggctgtaaaaaagggctgctttgagaggctgttccaggctttagagcag
agcttggatagcctggccctgaccagttttggggtgatggacaccaccctggaggaggtc
ttcctcaaagtgtctgaggaggaccagtcactggaaaacagtgatgctggtgagacctct
cctgtgcctccagacatgaaaggttctccagggggcagctcagtggggaaatcctcagtg
ggttcaggaggccagggggggtcacagggtgagactggaccttcagtggagagtgaaaag
ctggaggtggagctgagtaatctggtgatgtgctccaggatgagccagagccagtcctcc
ctgaaatcctcctcatccatcggctcagttaggggcgatgaagggggcctctatgcagac
tactatggagattactgtccgctctttgacaatggccaagagtctgactctgccagcctg
aggggtcatgcagagaaccccttgtccccagagcccaaagtccaggaggggcaaggtagc
ttcaagttggagggttggtggttaaagctaagtcagtttcatggcctaattgtgaagagg
ttccactgcgccaagaggaataccaagggcctcttctcacagatcctcctacctgctttc
ttcgtttgtgtggccatgactgtggccttatctgtgcctgagattggagatttgcccccc
ctgatcttgtccccatctcagtatcataactatacacaacctagaggcaatttcattccc
tacgccaatgaagatagaccccagtacagaagtaagctgttgccagatgccagtccacag
gtgatcatcaacactctccgtctgccctctggggtgggtgctacctgtgtcctcaaaacc
ccctttaacagcaccctggaccagctggcccagaccctcaatcctagtgccaacaactcc
aagaccctggctgcccgctactttgactccatgtgtatggactccttcacacagggggtc
cccctctcaaactttgtacccccacccccttcaccagcaccttcagatgacccagaccca
cgctttgaggatggactgtggaacttcacagttgcccctcccactacagtccatgagcct
gtgacatctcctcccaccctccccctgtccatccatgagccggtccgttgtacctgctcc
atgcaggggacaggcttctcctgccccagcggggtgggaggacggcccccactcatgaag
gtggtgacaggtgacatcctggtggacatcacaggccgcaacgtctctgagtatctgctc
ttcacatcagacagactacggctgcacagatatggtggtttaacagtgggaaacatacag
aaatcaattccagcatcctttggaagaaagatacctccaatggttcgtaaaatagctgtt
cggggagcagctcaggttctgtacaacaacaaaggttaccacagcatgccaacgtatctg
aatgtcctcaacaacgccatcttgcgtgcaaacctacctgcatccaaaggcaaccctgct
gcctatggtatcacactgacaaaccacccaatgaatcgaaccagtgccagcttatctttg
gactacttgctccaggggacagatgtggtgattgccatctttattattgtggccatgtct
tttgtgccagccagctttgtggttttcctggttgcagagaaatccacaaaggccaagcac
ctgcagtttgtcagtggctgtgaccctgtcatctactggttggctaactacatatgggac
atgctgaactatctggtacctgccacatgctgtgttatcattctgtttgtgtttgacctg
ccagcctacacctctccaactaacttccctgctgtcctctccctttttcttctttatggg
tggtccatcactcccatcatgtacccagcatccttctggtttgaggttcccagtacagcc
tatgtgttcctcatagtcatcaacctcttcattggcatcactgcaactgttgccaccttc
ctcctccagctctttgaacatgataaggatctaaaaagagtaaacagttacctgaagtcc
tgttttctcatcttccccaattacaaccttggccatggcctgatggagatggcctacaac
gagtacatcaatgaatactatgctaaaataggccagtttgacaagatgaagtcaccgttt
gagtgggacattgtgactcgaggactcgttgccatgacattcgaaggctttgttggcttc
ctcatcaccatcctctgccagtacaactttctcaggaaacctctgagggtgccagtcagc
tgccagcctatagatgatgatgatgtagacgtggcctgtgagcgacgaagagtgctgcga
ggagatgctgataacgacatgctgaagattgagaacctgacaaaggtgtataaatccagg
aagatgggtcgtatcctggcagtggaccgactttgtctgggtgtccggcctggtgagtgt
tttggactactgggagtaaatggagccgggaagaccaccaccttcaagatgctgacagga
gatgagtgcaccactggaggagaggccttcattaatggaaacagtatcctgaaggacctg
ttacatgtgcaacagagtattggctactgtccacagttcgacgccctatttgatgatctg
acagccagggaacacctggagctttacacccgccttcgtggcattccctggaaggaccag
gaaagagtggtgcagtgggcattagaaaagttggagttgtccaagtatgcagacaagcct
gccggcacttacagtggaggaaacaaacgcaagctttccactgccattgcgcttattgga
tacccctcacttatctttctggatgaacctaccactgggatggacccaaaggcccgcaga
tttctctggaatttaatcctggacataattaagactggccgctcagtagtgctgacatca
cacagcatggaggagtgtgaggctttgtgcaccagactgggtattatggtgaatggcagg
tttaaatgtctgggcagcatccaacacctcaagaacaggtttggggatggttacatgatc
acagtgaggaccaagagcagctccaatgtaaaggaggtggttcgattcttcaacagaaat
ttccctgaggccgtgctgaaggagcgtcaccacaccaaggtccagtaccagctgaagtca
gagtggatctccctggcacaagtcttcagtaagatggagcaggtggtggaggtgttgggc
atcgaggactactctgtcagtcagaccactctggacaatgtgtttgtcaactttgccaaa
aagcagagtgacaacttagagcagcaggaggtgttgcccccaggtggtgctcagtccccc
ttgcagcacatcctcaacctgttgaagtctcggccagccaacacagagctcaatgctctg
atcagtgaggcaccagaggagctggagagtgatgatgatgaaggactgataagctttgaa
gaggaaagggtgcagctctccttcaacacagacacactctgttga
DBGET
integrated database retrieval system
