Lates calcarifer (barramundi perch): 108878371
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Entry
108878371 CDS
T04895
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108878371
Membrane trafficking [BR:
lcf04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
108878371
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
108878371
NCBI-ProteinID:
XP_018524517
UniProt:
A0AAJ7LKE8
LinkDB
All DBs
Position
LG13:complement(9332249..9366481)
Genome browser
AA seq
3278 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAILKNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKLKAAEQENPKLEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDVTNPNCPLSFGVSLK
NLSLQTADKNWKPSLLDENSRLFFKLVRLDSLFAYWNVNSALFSNHSADEALRCLQSSME
IHSSLPASHDFIFRPISADAKLRMNPRSDVDFSSPKVDLMVNLSEVAIELNRPQYISILE
LLGSVDMMSRNLPYRKYRPMVHVHKNARIWWKYVITGILEVDVKPRLHMWSWQHIRRHRR
TVKKYRELYKTKITSKKPSEELLKQLEEPEKTLDIFNITLARQQAEVEASKAGLRIYRPG
LKMEEEESEGWFSWMWSWGGEAETQKKEVKTGGFDELLTPAEKAKLYTAIGYSEIAANPN
LPKNFEDMKVNFHMERLSVSIKDNKDKNEIIRLTVGELQSTLTQRPGAQAIKLTAQLSLF
EVTGLASKRPAPTLLSSRKAATGAGTPLLCILFETNPLDESANQRLHVESQPLEIIYDAI
TVNSMSAFFMPPDDLQLDELTNATLMKLEQFRDRTATGLMYVIETQKVLDLKVNLMASYV
IIPQTGFYNGTQNILLLDLGHFQMSSQSRKGLPQLSVCSSNIEDIMSRAYDSFDIQLSSL
QFLYSKPDGDWKKARKQKQSLLHILEPVDLKVDFSRAMVVKDSRMAKYKMSGELPLLSLR
ISDDKLRSVLELVESIPLPESRPAARSTGSSSTPRPKQFTPQLTPRRPLNLADQRSSVMF
ESCETISITSLGSEEDLFYDAPSSPIGDKPFFPDNPMPLRYGDLHKRKSLIKEDTQKNMT
DFIMKFEISEFSVQLCRLSGGQEVTVLHLDIEGLGTELKLRTFDMTSNTYLREICLKCPE
YMDSEDKQVQLITTLDNTEVDLLTLEYIKADKNGPEFKSLHNNTEQLIKVTFSSLDVHLH
TEALLNTMNFLNNLLPPSTKKEGGQEELPTIPEEEEVEAEREGEKKEGAALTRKRSTKSS
KFKDVVNLHIRADLRCLKVFIRGQKARISEISIEGLVSEVLMRKKDMEVLANLKNIVILD
CDKDALYKKAVSIADKEVFAFRMVNYTDATEGDAYLDMSKVDTLVTLTVGCIQVIFLNKF
VSSILAFINNFQEAKEALAEVTVQAAEKAASGVKELAERSTRIALNVHFNAPVIFLPQSS
SSSNVIVADLGLLSVKNRFSKQPFKSDAKIPPVVDIMTVKLTDLKMYRTTYINGGFQGET
QLLKPVSLDLEIQRNLSSNWYHSIPDIEITAHLKPMSLILSQDDMIVVLRTLSENLSEKS
DAVPPSAPPPTTDHSSDSVSNKESQGSGTTGPTSSNTVVIAAVVETQKNSKLKNTLKLDF
KFDSMTLVVFSPNGNEIQLLDSHDEQLKLAEFTLGTISTSVHMYSDGSMKASVRLAACLL
DDKRPRIKMVTPRMMAMRPGAEDNMMVEVNYRQGREGTTLDTVVQDVYLCASMEFLLTVA
DIFLKATQQGFAEVPQHKSSSAAGEKKNINSSVTSKESTAPPAVVSKTEMNVVVRNPEIV
FVADLTRADAPALVMTTQCELVMKSGAEGSQMTAVIKDLKVVACPFLREKRKNNVTTVLQ
PCQVFFKSTQTPTTPQAMEVSINALTLKVSPIIINTVITIQSALTPAAETPEELDSPVPV
DLWEKQGWKELKLWFLEEEGDEDTRSLVPLIPQGESLEVTIKSICLTLEAGVGHRTVPML
LAKSSFQGDVTNWSTLINLHSELNLEVHYYNEMMGVWEPLLEPLEDETRDGFRPWRLELK
MKKKPVKYTGLSDEVDYNVPDYKTVIVISSKDQLNITLSKCGLAMLSNLGTAFAEAAKQT
SECFQKDEAPFVVKNHLGLPVAVRHSEMFCPIGHKNTNCIVKLQDGETLGMDYSTTTESD
QFSAMISLSGKDYFIQPTPVGHTSASVIPLIKVGRGMYSVMHKESGVTRFLVCQISSVEG
SKYIKIRSPFQIINHFTIPIRVFEGSTCLGPALPTEEFCVPLDSYRSELSLQPITEDDDD
NQLAQFECSEGFSYEDFSNQQPETRLQQTCRRRGNQGGVMMINIVPVKDTVTFKHTGDIG
ENFDVPFVLHLWPSVLLRNLLPYPITYELKDSGASAPEATLDPGHSAQLQTAVINQSRLS
LRLLNYLAQDWSSEYSLQSDQEEITFIVFQSLREDDEDECDGTERKRAELDIAVHVKYDH
GQTVIAIHSPYWMVNKTGRLLQYKADDIHRKHPLDYDMPLLFSFKPRYFLRNNKVSLMIS
DSELSDDFSLDTVGSHGDVKCKGRYKDYLVGVKIDASSFSLTRIVTFVPFYMLVNRTKHS
VFICEEGQDNWTEAQPEQSAIPFWPENDTKRLKIKVEGCLSPPRTIDFTRPENCLLLRLD
NSVGGITVDVNLSEHSATIRFSEYHDGAAPFLIINHTKDQTLQIHQSNRTETTWVADELL
DLSFSVEEDSSQKATEQEELEPGKAVHYTWAEPTGSRELCWTCGTYSGKLKSEEDLRKDM
NNEGKLFVISFYEGLQRVVLFTEEQRIYKLLCESEKAQLAEQEIILSLKSMGVSLVNNSS
SQEVSFIGITSSDVVWEIKPKKKNRWKTMSTKEAEMLENSFKEYIESSPVDNAIVDLEHS
YQVSFTPNGMDMRMLEPCDAPLRRHFLPGVKVEYSVSPRQRSYRVQIHRIQIQNQLPGAI
FPYVFYPVKLPKSITMDSEPKPLTDISIVTRAAGRSDISRIKYFKVLIQEMDLKLDLGFL
YAILDMFTPENASITTSEQEVELFEKDIEYIKTELNHVSAADTTPISLYEYFHISPIKLH
LSFSLSTGGEDGLKEKRDTELIPVQSLNLLLKSIGATLTDVQDVVFKLAFFELTFQFCTT
QQLQWEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEE
FVEGMALGVKALVGGAVGGIAGAASRITGAMAKGVAAITMDEEYQQKRREAMNKQPSGLR
EGLTRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMA
SSTFQGIKRAAETSQDVESLRPPRFIHEDGVIRPYKEREGIGSQMLQKIENGRFAKYRYF
AHAKVNDSDFLMITKRGIFFVTKGTFGQLTCEWQYLFEEFTKEPMIVEDRRLRIEAKERV
KSVFHAKEFGKIINFKTPEIAKWVLAKLEDARESLPKY
NT seq
9837 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtggtggtagatgtcctcaaccggtttttaggggactacgttgtc
aaccttgacagctcacagctaaaacttggcatatggggaggtgatgccattctcaaaaat
cttgagataaaggaaaatgccttgagtcaacttgacattccttttaaagtgagagccggt
catataggacggctggagcttaagattccatggaagaacctctacacccagtcagtggag
gccacactggatggtgtctatctgctcatagtccccacagcaagtataaagtatgatgca
gaaaaggaggagaaacagctacaggaggctcgacagagggagctacagcggatagaggaa
acaaagctgaaggctgctgaacaagagaaccccaagttagagaagcaggacacctttgtg
gaaaagcttgtcactcaggtcatcaaaaacctgcaagtcaagatctctaacatccatgta
cggtatgaggacgatgtcaccaatccaaactgtcctctgtcatttggagtgtcacttaaa
aaccttagccttcagacagctgataagaactggaaacccagtcttttggatgaaaattcc
aggcttttcttcaagctggttcgactagacagcttgtttgcctactggaatgtcaactca
gcgctcttctccaatcacagtgcagatgaggccttgcgatgtctccagagcagcatggaa
atccacagctctcttcctgccagccatgacttcatttttcgtccgatatcagcggatgct
aaactacggatgaatcccaggtcagacgtggacttctcctctcctaaagtggacctgatg
gtcaatctcagtgaggtggccattgaactcaatagaccccagtacattagcatcttggag
ttgctgggctcagtggatatgatgtcccggaacctgccatacaggaagtacagacccatg
gtccatgttcacaagaatgctcgtatatggtggaagtatgtgattacaggcatccttgag
gtagatgtgaagccacgtctccatatgtggtcatggcagcacattcgcagacaccggcgg
acggtcaaaaaatacagagagctctacaagacaaagatcaccagcaagaaacccagcgag
gagctgctcaaacaactagaggagcctgagaagaccttggatatttttaacatcacattg
gccaggcaacaggctgaagtggaggcaagcaaggcaggcctgcgtatttaccgcccaggg
ttaaagatggaggaggaggaatctgagggttggttcagctggatgtggagctggggagga
gaggctgaaacacaaaaaaaagaagtcaagactggaggttttgatgagctcttaacccct
gctgagaaagccaaactctacactgccattggatacagtgaaattgctgctaatcccaac
ctgccaaagaattttgaggacatgaaggtcaacttccacatggagaggctgtctgtgtcc
atcaaagacaacaaggacaaaaatgagatcatcaggctgactgttggagaactccagtcc
acactcacacagagacctggagcacaagctatcaaactcacagcccagctaagtttgttc
gaggtcactggcctggccagtaaacggcctgcaccaaccctcctttcatcaaggaaggca
gctacaggagcagggacgccactgctttgcatcctgtttgagaccaacccgctggatgag
agcgctaaccagcggcttcatgttgaatcacagcccctggaaattatctatgatgcaata
accgtgaacagcatgtcagcattcttcatgcctcctgatgacctgcagctggatgagctc
accaacgcaaccctgatgaaactggaacagtttagggaccgcacagccactggtctaatg
tatgtgattgaaacacagaaagttctcgacctaaaggtgaacttgatggcctcctacgtc
atcattccacagactggattttacaacggcacccagaacatcctgcttttggatcttggt
catttccagatgtccagtcaaagcaggaagggtctgcctcagctgtcagtttgctccagc
aacattgaagacatcatgtcaagagcatatgacagctttgacatacagcttagtagcctg
cagttcctttatagcaaaccagatggtgactggaaaaaggcccgaaaacagaaacagtca
ctgctccacatcctagagccagtggatctaaaagtggatttcagcagggcgatggtcgtc
aaagactcccgcatggcaaagtacaagatgtctggggagcttcctctgctgtctctacgt
atttctgatgataaacttcgaagtgttttggagctggttgaaagtatccccctgcctgag
agcagacctgctgcacgcagcactggttcctcctccactccaaggccaaaacagttcacg
ccccagctcactcccagaagacctctcaacttagctgaccagcgctcctcagtcatgttc
gagtcatgtgagaccattagcatcacctctttggggtcagaggaagatttgttctacgat
gctcccagctctcccattggtgataaaccattcttcccagacaatcccatgccgctgcgc
tatggcgacttgcacaaaagaaaaagccttatcaaggaagacactcagaagaacatgact
gacttcatcatgaagtttgaaatcagtgagttttctgttcagttgtgtcgtctgtctgga
ggtcaggaggtcacagtgctccatttggacatagaaggtctgggcactgagctgaagctg
cgcacctttgacatgacatcaaatacgtaccttcgagagatctgcctcaagtgtcctgaa
tacatggattctgaagacaagcaggttcagctgataaccaccttagacaacacggaggtt
gacttgctcactttggaatatatcaaagctgataagaatggccctgagttcaagtctcta
cacaacaatacagagcagctcatcaaggtgaccttttcatccctggatgttcatctacat
acagaggctctcctcaataccatgaacttcctcaacaacctccttcctccatccactaag
aaggagggagggcaggaagaactccccactatccctgaggaagaagaggtggaagcggag
agggagggagagaagaaggagggggctgctttaaccaggaaaagaagtacaaagagttca
aagtttaaagatgtggtgaatctgcatatcagggccgatctccgctgtctgaaggttttc
attcggggacagaaagccagaatctctgagatcagtattgagggtcttgtttctgaggtc
ctgatgaggaagaaggatatggaggttctggccaacctgaagaacattgtgatcctagac
tgtgataaagacgccttatataagaaggctgtgtctatagcagataaggaagtgtttgca
ttccgcatggtgaactacacagatgcaacagaaggagacgcctatctggacatgtctaaa
gttgacacgcttgttacactaactgtgggatgcattcaggtcatcttcctcaacaagttt
gtctcttcaatattggcattcatcaataatttccaggaggccaaagaggctctggccgag
gtgacagtccaagctgcagaaaaggcagcgtcaggtgtgaaggagctggctgagcgaagc
acccgaatcgctcttaacgtccacttcaatgcgccagtcatcttcctcccccagtcctcc
tcttcctccaacgtcattgtagctgacctcggtctgctgtctgtcaagaaccgtttttcc
aagcagccatttaaaagtgatgctaagatcccgcctgttgtggatataatgactgtgaaa
ctgactgacctcaagatgtacaggaccacatacataaatggagggtttcagggagagacc
caactgctgaagccagtcagcctggacttggaaatccagagaaatctttcatccaactgg
tatcacagcatacctgacatagagatcactgctcatctaaagcccatgagtctgatcctc
agccaggatgacatgatagtggtcctaaggactctgagtgagaacctgtcagagaagtct
gatgctgtcccaccctcagctcctccacctaccactgaccactcctcagactctgtatct
aacaaagagtcccagggctctggaaccactggaccaaccagcagtaacactgtggtgata
gctgctgttgtcgagacccagaaaaacagcaagctgaagaacacactcaaattagacttc
aagttcgattccatgacgctggttgtgttcagccctaatgggaatgagatacagctgttg
gactcgcatgatgagcagctgaagctggcagaatttactctgggcaccatctctacctcc
gttcacatgtactctgatggttcgatgaaggcctcagtccgactcgctgcctgccttctt
gatgacaagagacccagaatcaagatggtcaccccaaggatgatggcgatgcgtccaggt
gcagaagacaacatgatggtggaggtgaactatcgtcagggccgtgaaggcaccacgttg
gacacagtggtgcaagatgtgtacttgtgtgccagcatggagttcctgctcactgtggca
gatatctttctcaaggccacccagcagggttttgctgaagtgccgcaacacaagagcagt
tctgcagcaggagagaaaaagaacattaactcctctgtcacatctaaagagtccactgca
cctccagctgtggtgtcaaagacagagatgaatgttgtggtgcgtaacccggagattgtg
tttgtggctgacctgacgcgtgctgatgccccagccctggtaatgaccacgcagtgtgaa
ctagtgatgaaaagtggagcagagggatcacagatgactgctgttatcaaggaccttaag
gtagtggcatgtcccttcttgagagagaagaggaaaaacaatgtgactacagtgctgcag
ccgtgccaggtgttcttcaagagtactcagaccccaaccacccctcaagctatggaggtt
tccatcaatgctctcacactgaaggtatctccaatcatcattaacacagtgatcaccatc
cagtcggcactgactcccgcagcggagacccctgaggagctggatagtcctgttcctgtt
gacctgtgggagaaacagggctggaaggagctcaaactctggttcctagaggaagagggg
gacgaggacacaaggtcactggtcccactgataccacagggagagtcattagaggttacc
atcaaatcaatctgtctgacactggaggctggtgtgggacatcgcactgtccccatgctt
ctggccaagtcctccttccaaggagacgtcacaaactggtccacactcattaacttacac
agtgaactaaacctggaggttcactattacaatgagatgatgggagtgtgggaacctctg
ctggaacccttagaggatgagacaagagatggtttcagaccatggagacttgaactgaag
atgaagaaaaagccagtgaagtacacgggtttgtcagatgaagtggattacaatgttcca
gactataagacagtcattgtcatcagcagtaaagaccagctcaacatcacactctccaaa
tgtggattggccatgctgagcaacctgggcacggcatttgcagaggccgccaaacagaca
tccgagtgcttccagaaggatgaagctccatttgtggtgaaaaaccatctgggcctgcca
gtggctgtccggcacagtgagatgttttgtcccatcggccataagaacaccaactgtatt
gttaagctgcaggatggggaaaccctcgggatggactattcaaccacaacagagtccgac
cagttctccgccatgatctccttgagtggaaaggactacttcatacagcctactccagtg
ggccacacctcagccagtgtgatccccctgatcaaggtgggcagaggaatgtacagtgta
atgcacaaagagtcaggagtcacacgtttcctggtgtgtcagatttcctctgtggagggc
agcaagtacatcaagatccgctctcctttccagatcatcaatcatttcacaataccaatc
agagtttttgaaggatcaacatgtctgggtccagctctccccactgaagagttctgtgtg
cctctggactcatacaggtctgagctgagccttcagccgataacagaggacgacgatgac
aatcagttggcgcagtttgagtgctcagagggtttcagttatgaagacttcagcaaccag
cagcctgagacacgactccagcagacctgccgtcgccgtggaaaccagggtggtgtgatg
atgatcaacattgtgccagtaaaggacactgtgacattcaaacataccggagatattggg
gagaacttcgatgtaccctttgtgcttcacctgtggccttcagtcctgctacgcaacctg
ctgccttatcccatcacctacgaactaaaggacagtggtgcctctgctcctgaggccact
ctggacccaggccactctgcccagctacaaaccgcagtcatcaaccagtcaagacttagt
ctccgcctgctgaactacttggctcaggactggtcctctgagtacagtctccagagtgac
caggaagagatcaccttcatcgtgttccagtctctacgagaggatgacgaagatgaatgt
gatgggacggagaggaagagggctgagttagacatagcagtgcatgttaaatatgaccat
gggcagacagtgattgccatccactcaccgtattggatggtgaataagacaggcaggttg
ctgcagtataaggctgatgatatccaccgtaaacaccccctggactacgacatgcccctg
ctcttctccttcaagcctcggtatttcctgagaaacaacaaggtcagccttatgatttca
gacagtgaactctctgatgatttctccctggatacagttggtagccatggagatgtgaaa
tgtaaaggcagatataaagattacctggttggtgtgaagattgatgcgagcagtttcagt
ctgacccgcatcgtgacctttgtgccattttacatgctggtcaacagaaccaagcacagt
gtcttcatctgtgaagaggggcaggacaactggactgaggcacagccagaacagtccgct
attcctttctggcctgagaacgacaccaagcggctaaagatcaaagtggaaggttgtttg
tcacctcctcggactattgacttcacacgaccagagaactgcctgttgctgcgtctcgac
aactctgtgggtgggatcactgtagatgtgaacctatcagagcactcagccacaatccga
ttctcagagtaccacgacggcgcggctcctttcctcatcatcaaccataccaaagaccag
actcttcagattcatcagagcaaccggacagaaaccacgtgggtggctgacgagctgctc
gacctctccttctcagtggaggaggacagctctcagaaggcaacagagcaggaggagctg
gagcctgggaaagctgtgcactacacctgggctgaacccaccgggtcccgagagctttgc
tggacgtgtggcacctatagcgggaagctgaagagtgaggaggacctccgcaaggacatg
aacaatgagggaaaactgtttgtgatctccttctatgaaggtctgcagcgcgttgtgctg
ttcactgaggagcagcgtatctacaagctgctctgtgagagcgagaaggcccagctggct
gaacaggaaatcatcctgtcgctgaagagcatgggtgtgtctctggtcaacaacagcagc
agccaggaggtttcctttattgggatcacaagctctgatgtggtgtgggaaataaagcct
aagaaaaagaatcggtggaagactatgagcactaaagaagcggaaatgttggagaacagt
ttcaaagagtacattgaatcttcacctgttgacaatgccattgtcgacctggaacacagc
taccaggtgtcctttactcccaatggcatggatatgcggatgctggagccgtgtgacgct
cctctcaggaggcacttcctgcctggggtgaaggtggagtacagcgtctcaccacgacag
agatcttaccgtgtccaaatccaccgcatacagatccagaatcagctgccaggagccatc
ttcccctacgtattttaccctgtaaaactgccaaagtctatcaccatggactcagaaccc
aaacctctgactgatatcagcattgtaacccgagcagcaggacgctctgatatctctcgc
atcaagtatttcaaggtcttgattcaagagatggatctgaagctcgacctgggcttcctg
tacgccatcctggacatgtttacccctgagaatgccagcatcacgacctcagaacaggag
gtggaactgtttgagaaggatatagagtatataaagacagaactgaaccatgtttctgct
gctgacaccactcctatcagtctctatgagtacttccacatttcccccatcaagctgcac
ctgagtttctctctgagcacgggaggagaagatggcctgaaggagaagagagacacggaa
ctcatccctgtccagtccctcaacctgctgctgaagagtattggagcaactctcactgat
gtgcaggatgttgtcttcaagctggccttctttgaattgaccttccagttttgcaccact
cagcagctacagtgggaggtcatcagacattattctaaacaggctattaaacagatgtat
gtgctggtgctgggcctggatgtgcttggaaacccctttgggttgatcagaggactgtca
gagggagtggaggctttcttctacgaaccctatcagggagccatccaggggccagaggag
tttgttgaaggaatggctcttggtgtgaaggctctggtgggaggagcagtagggggtata
gcaggtgcggcctccaggataacaggtgccatggcaaagggtgtcgctgccataacaatg
gacgaggagtaccagcagaagagacgagaagctatgaacaaacagcccagtggcctgaga
gaggggctgaccaggggtggaaaaggacttgtgtctggatttgtcagtgggatcacaggg
attgttaccaaacctattaaaggagcccagaaggagggtgcagcaggtttctttaaaggt
gttggaaaaggtctggttggtgcagtagccagacctacagggggcattattgacatggcc
agcagtaccttccaggggatcaagagggcagcagagacttcacaggatgttgaatctctt
cgtcctcctcgcttcatccacgaggatggtgtcatacgaccatataaggagagggaaggc
atcggcagtcagatgctccagaaaattgagaatggacgttttgccaagtacagatacttt
gctcatgccaaggtcaatgattctgacttcctcatgatcactaagaggggcatttttttt
gtgaccaaaggcacatttggccagttgacctgtgaatggcagtatctgtttgaagagttc
accaaggagccgatgattgtagaggaccgccgacttcgcattgaggccaaggagagagta
aagtcagtcttccatgccaaggagtttgggaagatcataaacttcaaaactcctgagata
gccaagtgggttcttgccaaactagaggacgcgagagagagcttacccaaatactga
DBGET
integrated database retrieval system
