Lates calcarifer (barramundi perch): 108878385
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Entry
108878385 CDS
T04895
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108878385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108878385
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108878385
Spliceosome [BR:
lcf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108878385
Complex C
U5 SnRNP specific factors
108878385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
PhoH
DUF603
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
108878385
NCBI-ProteinID:
XP_018524544
UniProt:
A0A4W6G062
LinkDB
All DBs
Position
LG13:complement(15409892..15423017)
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKAQRTK
PQKLEERRDKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
HAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIS
DYGGDKDLQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDEHSDEDSEGEEADVGCTL
SANLGATGDVMTVKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKERIIGKMESDQELSKIL
YQLQETEKEDIIREERSRRERVRKSRVDDLEAMDIDHGESMAPRQVLDLEDLAFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFAEDEVLVAIEKLPKYAQAGFEGFKTLN
RIQSKLFKTTMETDENLLVCAPTGAGKTNVALMAMLREIGKHINLDGTINVDDFKIIYIA
PMRSLVQEMVGSFSKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVGKLPDMLN
AEIVLGNVQNVKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSSDPLLERRRMDLVHTAAN
VLDKNSLIKYDKRTGSFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLNRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFKKLPEEVIKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVEL
TITPDFQWDDKIHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSAFEALYQ
NKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPM
EALAEQVFVDWHQKFQDILNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQR
KNVQNVSLFIVDEAHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVVF
VPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFLEKINDSTLKETLANGVGYLHE
GLSATERRIVEQLFNSGAVQVVVSSRSLCWGINISAHLVIVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPMLDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLHDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIRH
HEDALLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPFFTSEHIKRCTEKGVESI
FDIMEMEDEDRTALLQLSDGQMADVARFCNRYPNIELSYEVAEKDNIKSGSPVLVQVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVMGIH
NYTLYFMSDAYMGCDQEYKFSVDVKEADSDGDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgcgcgtagtctgcagtatgagtacaaagcgaactcaaatttggtg
ttgcaagctgatcgatctctgatcgaccgcacacggagagatgaacccaccggagaggtg
ctgtccctggtggggaagctggaggggaccaagatgggtgacaaggctcagaggaccaaa
cctcagaagctggaggagagacgagacaagaggcgaaaaagagatgaggacaggcacgat
atcaacaaaatgaagggatttacccttctgtctgaaggcattgatgaaatggtgggcatc
gtgtacaagcctaaaaccaaagaaactagagagacctatgaggtgttgcttagcttcatc
catgctgctttgggagatcagcctcgtgatatcctgtgtggagcagctgatgaagtatta
gcagtgttgaagaatgacaaaatgagggataaagaaaggcggcgtgaagtagagcagctt
cttggacctgctgatgacacacgctaccatgtgctggtcaatctgggcaaaaagatctca
gactatgggggagacaaggacttacagaatatggatgacaacatcgatgaaacatatggt
gtgaatgtccagtttgaatctgatgaggaggaaggggatgaagaccagtttggtgaagtg
cgagatgaacactcagatgaagacagtgaaggagaggaggcagatgtgggctgcactctt
tcagccaatcttggtgccacaggcgatgtgatgacagtgaagaaaaaagatctccatcct
cgagacattgatgctttttggctccagcgtcagctcagccgtttctatgacgacgccatt
gtctcacaaaagaaagctgatgaagtcttagaaatcctcaagaccgccagtgatgataga
gaatgtgagaaccagctggtattgctgctcggcttcaacacctttgatttcatcaaaatc
ctccgtcagcatcgtcgcatgattcagtattgcactatgctggcgagcgctcagagtgag
gcagaaaaggaacggatcatagggaagatggagtctgatcaggaactgtcaaagattctt
taccagctgcaagagacagagaaggaggatattattcgggaggagcgatctcgcagggag
agggtgaggaagtctcgtgttgatgacttggaagcaatggacattgaccatggagagtca
atggcccctcgtcaggtgctagaccttgaggatctggccttcacccagggcagtcatttc
atggccaacaagcgttgccagctgccagacggctcttttcgcaaacagcgtaaaggttat
gaagaagttcatgtgcccgccctcaaacccaagccctttgctgaagatgaggtgcttgtt
gctattgagaagctgcctaagtatgcccaggctggatttgaaggattcaaaaccttgaac
cgcatccagagcaagctgtttaagaccaccatggagacagatgagaaccttcttgtgtgt
gcacctacgggagctggtaagaccaacgttgccctgatggcaatgctgagggaaattgga
aaacacataaacctagatggaaccataaatgtggatgactttaaaatcatctacatcgca
cctatgcgttcactagtacaggagatggtgggaagttttagtaagcgcttggcaagttat
ggcatcacagtgtctgagctgacaggagaccaccagctctgtaaagaggagattaacgct
actcaaatcatcgtctgcacccctgagaagtgggacatcatcacccgtaaaggtggagag
cgtacctacacccagctagtgcgcctcattatcattgatgaaatccacctgctgcacgat
gaccgtggacccgtgctggaatctctggtggcgaggaccatccgcaacgtggagctgacc
caggaggatgtgcgtctgctggggctcagtgccacactacccaactacgaggatgtggct
acctgcctccgtgtagatcctgcaaagggtcttttttatttcgacaacagtttccgcccc
gtgcccttggagcagacttatgtcggcattacagagaagaaggccatcaagcgtttccag
atcatgaatgagatcgtttatgaaaagataatggagcatgctggaaagaatcaggtgcta
gtgtttgtgcactccaggaaggagacaggaaagactgccagggcaataagagacatgtgt
ttggagaaggacacactgggtcttttcctcagagagggttcagcatccactgaggtgttg
agaactgaggcagagcagtgcaagaacctggagctgaaggatttgctgccttacggtttt
gcgatccaccacgccggtatgaccagagtggaccgtacgctggtagaggatctgttcgca
gatcgacacatccaggttctggtctccacagccactctggcttggggtgtcaacctgccg
gcgcacactgtcatcatcaaaggaacgcaggtgtatagcccagagaaaggcagatggact
gagctgggagccctggacattttacagatgcttggtcgagctggtcgtccacagtacgac
accaagggagagggaatcctgatcacatcccacggagagctgcagtattatctgtccttg
ctcaaccagcagctgcccatagagagtcagatggtgggcaagctgcctgacatgctcaac
gcagagatagtactgggcaatgtgcagaacgtaaaggacgctgtgaactggctcggctac
acctacctgtacgtgcgcatgcttcgcaaccccaccctgtatggcgtctctcacgatgac
cgcagttcagaccccttgctcgagaggcgcaggatggacctggtgcacacagctgccaac
gtcctggacaagaacagcctgatcaaatatgacaagaggactggcagcttccaggttaca
gacctggggcgcatcgccagtcacttctacatcactcatgactccatccaaacctacaat
cagctgctgaaacccactctcagtgagattgagctctttagagtcttttcactctcctca
gagttcaggaacatcacagtgagagaggaggagaagctggagcttcagaagctactggaa
agagttcctattcctgtgaaggaaagcatcgaggagcccagtgctaagatcaatgtgctg
ctccaggcgtacatctctcagctcaaactggaagggttcgccctcatggcagacatggtg
tacgttacacagagtgctggaaggttgatgcgggccatatttgagattgtgctgaataga
ggctgggctcagctcacagacaagaccatgaatctttgcaagatgattgacaagagaatg
tggcagtccatgtcgccgcttcggcagttcaagaagctgccagaggaagtgatcaagaag
atcgagaagaagaacttccccttcgagcgtctttatgacctcaaccacaatgagattggt
gagctgatccgaatgccgaagatggggaagaccatccacaaatacgtccaccagttcccc
aaactggatctggccgtccacctgcagcccatcacccgatccacgctgaaagtggagctc
accatcactcctgacttccagtgggatgacaagattcatggatcatctgaggctttctgg
atcctggttgaggatgtggacagtgaggtcatcctccaccacgagtacttcctgctcaaa
gccaagtacgcccaggacgaacaccttgtgactttctttgtcccagtgttcgagcctctg
ccgccacagtacttcatccgtgtggtctcagaccgatggctctcctgtgagactcagctc
ccagtatccttccgtcacctgatcctaccagagaagtaccctccacccactgagctgctg
gacctgcagcctctgcccgtcactgctctcaggaactcagcctttgaggctctctaccag
aacaagttccccttcttcaaccccattcagacacaagtgttcaacgctgtgtacaacagt
gatgataatgtgtttgtgggagctccaactggcagtgggaagaccatctgtgctgagttt
gctattctgaggatgctgctgcacaatgcagaaggtcgctgtgtctacatcaccccaatg
gaagcactggctgagcaggtgtttgtcgactggcaccagaagttccaggacatcctgaac
aagaaagtggtgctgctgacgggagagaccagcacagatctgaagctcctgggaaaaggc
gacattattgtcagtacccccgacaaatgggacatcctgtctcgtcgctggaaacagagg
aagaacgtccagaacgtcagcctgttcattgtggatgaggcacacctcatcggaggagaa
aacggacctgtgttggaagtcatctgctccaggatgaggtacatctcctctcagatcgaa
cgtcccatccgcatcgtggccctcagctcgtctttgtctaacgccaaagacgtggcccac
tggctgggctgcagcaccaccgccacattcaacttccaccccaacgtcaggcccgtgcct
ctggagctgcacatccagggcttcaacgtgagtcacactcagactcgcctgctgtctatg
gctaagccagtgtaccacgccatcatgaagcactctccctccaaaccagccgtggtgttc
gtcccatcccgcagacagactcgcctcacggccatcgacatcctcactttctgcgctgct
gatgtggttcctcagaggttcttgcattgcactgagaaagacctggctccgttcctggag
aaaataaatgactcaactttgaaagagactctagccaacggcgtgggctacctgcacgag
ggcctgtctgcaactgaacgcagaatagtggagcagctcttcaactcaggcgctgttcag
gttgtggtgtcctctcgttcactctgctggggcatcaacatctcggcacacctcgtgatt
gtcatggacacgcagtactacaacggcaaaatccacgcatatgtggactatcccatatat
gacgtcctccagatggtgggcaaggccaacagacccatgttagatgatgagggacgctgc
gtcatcatgtgtcagggctctaagaaggacttcttcaagaagttcctgtacgagccgctg
ccggtggagtctcacctggaccactgcctccacgaccacttcaatgcggagatcgtcacc
aagacagtggagaacaagcaggacgctgtggactacctgacgtggacattcctctaccgc
cgtatgacccagaaccccaactactacaacctgcaaggcatgtcccatcgtcacctgtca
gaccacctgtctgagctggtggagaacacattacacgacctggagcagtccaagtgcatc
agcatagaggatgagatggatgtagctccgctcaatttgggcatgatcgctgcctactac
tacatcaactacaccaccatcgagttgttcagcatgtccctgaatgccaagacaaagatc
cgtgggttaatcgaaatcatctctaatgccgccgagtacaagaacattcctatcagacac
cacgaggatgcacttctccgacagctggcacagaaagtgccccacaaactgaacaacccc
aagttcaacgatccccatgtgaagaccaacctgctgctgcaagcccatctctccaggatg
cagctgagcgccgagctgcagtcggacacagaggagattctgagcaaggcgatccgtctg
atccaggcctgcgtggacgtgttgtccagtaacggctggctgagtcctgcactggcggca
atggagctggcacagatggtcacccaggccatgtggtccaaggactcgtacctcaaacag
ctgcccttcttcacctcggagcacatcaagcgctgcacagaaaaaggtgttgagagtatc
tttgacatcatggagatggaggatgaagacagaactgctttgctgcagctctcagacggc
cagatggccgacgtggctcgcttctgcaaccgctaccccaacatcgagctgtcgtacgag
gtggcagaaaaggacaacatcaagagtgggagtccagttctggttcaggttcagctggag
agagaggaggaggtgactgggcctgtcattgcacctctcttcccccagaaacgtgaggag
ggctggtgggtggtgattggagaccccaagtccaacagcctcatctccatcaagaggttg
actcttcagcagaaagcaaaggtcaagctggactttgttgcaccagtgatgggcattcat
aactacaccctgtacttcatgagcgacgcatacatgggctgcgaccaggagtacaagttc
agcgtggatgtgaaggaggccgacagtgacggagacagcgactcagactaa
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integrated database retrieval system
