Lates calcarifer (barramundi perch): 108878412
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Entry
108878412 CDS
T04895
Symbol
cacna1ba
Name
(RefSeq) calcium channel, voltage-dependent, N type, alpha 1B subunit, a
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04010
MAPK signaling pathway
lcf04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108878412 (cacna1ba)
04020 Calcium signaling pathway
108878412 (cacna1ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108878412 (cacna1ba)
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
108878412 (cacna1ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
108878412
NCBI-ProteinID:
XP_050931079
UniProt:
A0AAJ8DU85
LinkDB
All DBs
Position
LG13:22316376..22460508
Genome browser
AA seq
2367 aa
AA seq
DB search
MARFEDELSSRYGGSCPTGPVRGASRQPGPPGGQRMYKQTMAQRARTMAIYNPIPVKQNC
LTVNRSLFIFSEDNIIRKYAKKITEWPPFEYMILATIIANCIVLALEQHLPALDKTPMSE
RLDDTEPYFIGIFCFEAGIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGILATVGADFDL
RTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLDFYMGK
FHRTCFRKDTGEQAAEFPCGLEAPARTCANGTTCREYWIGPNFGITNFDNILFAVLTVFQ
CITMEGWVDILYNANDASGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVEKR
QEFLKLRRQQQIERELTGYLEWICKAEEVMLAEEDKNAEVKSVDGAWYKRKHNNSVLKRT
KKSKNELINAEEGEDHFTDISSVGSPFARASVKSKNESSSYFKRKEKRIRFTIRRLVKSQ
SFYWTVLCLVGLNTLCVAIVHYDQPEGLTNALYLAEFVFLGLFLVEMSMKMYGLGPQNYF
HSSFNCFDFGVIIGSIFEVIWAAIKPGASFGISVLRALRLLRIFKVTKYWNSLRNLVVSL
LNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDETPTTNFDTFPAAILTVFQILTG
EDWNAVMYHGIESQGGVHGGMFSSIYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDE
EEQEEAISKKLALQKAKEVKEVSPLSAANISITAKEQQKSVKTMSVWEQRANQLRRQNRA
SCEALYSELEPEERARLSSALHIRPDMKTHHDRPLLVEPCDGPLLGSHQHHHHKPCMTED
AETATDPPVPHQPRRHHRHRDRTRTKEETNDNGDTGGRHHVHHSRSEDHNGNRGKEGKSE
RSHSREGGSKHHHQSSVDDSGGGGVTGEREHRHHHSHRQSRGGNGTVNSGGRGERRSRYK
DARSSNRDGDRNSRGDSGASGERRRHQTHGSRAKSTVEGEESNKREKTHGHRDRCGDSEG
ESLAISHQQGSGGSNWPPDQPEDSDNQRNVRQSGQTSIQIPPVTVTSPPGETTLIQMNSI
DCETMPTNEKTLEDLSQSGPKPVLPYSSMFIFGQTNPVRRLCHYIVTLRYFEMSILVVIA
MSSIALAAEDPVWTNAPRNNVLKYLDYAFTGVFTFEMVIKMVDLGLLLHPGSYFRDLWNI
LDFIVVSGALVAFAFSSFMGSQQGVTRGTKGKDISTIKSLRVLRVLRPLKTIKRLPKLKA
VFDCVVNSLKNVLNILIVYILFMFIFAVIAVQLFKGKFFYCTDESKGLEKDCKGQFLDYD
KDEVAAMPREWKKYEFHYDNVLWAFLTLFTVSTGEGWPTVLKHSVDATFEDQGPSPGYRI
EMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKALSECSLEKNERACIDFAINAKPLT
RYMPENTQSFQYRMWKFVVSAPFEYSIMIMIALNTVVLMMKFHGASDLYEVMLKNLNIVF
TILFTLECILKIIAFGPLNYLKDAWNVFDFVTVLGSITDILVTEINTTDRLLNLSFLRLF
RAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIELNEDT
AINHHNNFRTFLQALMLLFRSATGEAWHEIMLSCLSHRDCDERSGSRGKECGSDFAYFYF
VSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACGRIKYLD
MYQMLLHMSPPLGLGKKCPPRVAYKRLVKMNMPIADDNTVHFTSTLMALIRTALEIKLAS
GMVAQRLSDAELKKELSTVWPSLSQKTMDLLVTPHKPNELTVGKVYAALMIFDYYKQNRA
RRLQQQQQNTSGSQCKVGALFKPLLPLTHMQEKDLPMMLNSVEPPSMLQPQPKSHAKSQP
QTRPSSNSLNNGGTLPSHDHNIKASSSWVMEKPKEVPQAKTKRSMSRGPSEDTPDTAIIQ
ESVELRKIETSASSTIPVPGTGLENQGRAASMPRLNAELQWGHSRHSPGIHLASVPDASP
MKRSASTVAPQRPHVVNLREYTLEKPSQERPHHHHHHHRCHHRRDRDKDRDRDREKRQRS
LDTPLGGQPPGSAGEPASDPAASRERAHDRGRSHERKHHHSSADKHRYYSCDRFCSREHC
HTKTATTSCAASPSEGQETSNKQGSGWVKGSPVAMSSSSSTPSHGRRQLPQTPLTPRPGV
AYKTANSSPVHCVSSQASLSPGRLSRGLSEHNTLWHSSSHHFPCPVTRISSEPFLGRSHG
DALGSPYSSLQDQLDVFQDVASLSPSPRAGCSSRTALPRMMGALLPAPQQNLGVPNGYHF
SFGGNTSPGSGVRAPRYYKEAEEDEWC
NT seq
7104 nt
NT seq
+upstream
nt +downstream
nt
atggctcgctttgaagacgaactgtccagccgctatggaggcagctgtcccacgggcccg
gtcagaggggccagtcggcagccagggcctccggggggccagaggatgtacaagcagacg
atggcccagagagccaggaccatggctatttacaaccccattccagtcaaacagaactgc
ctcaccgttaaccgctctctgttcatattcagtgaggataacatcatacggaaatatgcc
aaaaagatcaccgaatggcctccatttgagtacatgatcctggccaccattatagcaaac
tgcattgtgctggctttggagcaacacctaccagccttagacaaaacaccgatgtcagag
cgtttggatgacacagagccctactttattggaatattttgttttgaggctggcatcaag
atcatcgccctgggctttgcctttcacaaaggctcttacctacgtaatggctggaatgta
atggactttgtggtggtcttaacagggatcctggccaccgtgggggctgattttgatctg
agaacactgagggcagtgagagtactgcggccgctcaaactggtctctggcattccaagt
cttcaggtggtattaaagtccattatgaaagccatggtacctctgctgcagatcggcctg
ctgctcttctttgctatcctcatgtttgccatcattggccttgacttctacatgggcaag
ttccatcgcacctgcttcaggaaagacacaggcgagcaggcagcagagttcccctgtggc
ctggaggctccggcaaggacctgtgcgaacggtaccacctgtagggagtactggattgga
cccaactttggcatcaccaactttgacaatatcctctttgctgttctcaccgttttccag
tgcatcaccatggagggatgggtggacatcctgtacaatgccaacgatgcctcagggaac
acatggaactggctgtacttcatccccctcatcatcatcggttccttcttcatgctcaac
ctggtgctaggcgtgctgtcaggggagtttgccaaggaaagagaacgggtggagaagagg
caagaatttctgaagctccgcagacaacagcaaatagaaagagaattaactggatacctg
gagtggatttgcaaagcagaggaggtgatgctggctgaggaagacaagaatgcagaggtg
aaatctgtggatggagcttggtacaaaagaaaacacaataactctgtgctcaaaaggaca
aagaagagtaagaatgaactcatcaatgcagaggaaggcgaggaccactttactgatatc
tcatctgttgggtcaccatttgctcgtgccagcgtgaagagcaaaaacgagagctcgtct
tacttcaagagaaaagagaagaggattcgcttcaccatccgtcgtctggtcaagtcacag
agcttctactggactgtgttgtgtctagttggcctcaacacattgtgtgtagccatagta
cactatgaccagcctgaggggctcaccaatgccctatacctggccgagtttgtattcctg
ggcctgtttctggtagagatgtccatgaaaatgtatggccttggaccccagaactatttc
cactcctcattcaactgttttgactttggggtgattattggcagtatttttgaggtgatc
tgggctgccataaaacctggagcctcatttggaattagtgtccttcgagctctgagattg
ctcaggatcttcaaagttaccaagtactggaattctttgaggaacctggtggtgtccctg
ctcaactccatgaagtctatcatcagcctgttatttcttctgttcctcttcattgtggtt
ttcgctctgctgggcatgcagctttttggtggccagtttaattttgaagatgaaacgcca
acaacaaactttgacacattccccgcagcaattctcacagtcttccagatcctaactgga
gaagactggaatgcagtcatgtaccatggcattgaatcacaaggaggcgttcatggggga
atgttttcctccatttatttcatcgttctcactctctttggaaactacacacttctcaat
gtgttcttggccattgctgttgataaccttgcaaatgcccaggagctcactaaggatgaa
gaggagcaagaggaggccatcagtaagaaacttgccctccagaaggccaaggaggtaaag
gaagtcagccctctgtcagccgctaacatttccatcacagctaaggagcagcagaagtca
gtgaagacaatgtcagtgtgggagcagagggccaaccagctgaggaggcagaaccgggca
agctgtgaggccctgtacagtgagctggagcctgaggagcgtgcccgcctgtcctcggcc
ctccacatccggcctgacatgaagacccaccatgaccggccactacttgtggagccctgc
gacgggcctttgctgggcagccaccagcaccaccaccataaaccctgcatgacagaggat
gctgaaactgccaccgacccccctgtgcctcaccagcctcgccgtcaccaccgccacaga
gaccggaccagaacaaaagaggagacaaatgataacggtgacactggggggaggcaccac
gtccatcacagtcgctctgaagaccacaatggcaaccggggcaaagagggcaagagtgag
agatcccacagccgagagggagggagtaagcatcaccatcagagctcagtggatgacagt
ggaggtggaggagtgacaggtgagagagagcatcgccatcatcattcacaccggcaatcc
agagggggcaacgggacagtgaacagtggaggcaggggagagcgaagatcccggtacaaa
gacgcacgttcctctaacagggatggggacaggaattccagaggagatagtggtgccagt
ggagagaggaggagacatcagactcatggatccagggccaaatccacagttgagggagag
gagtccaacaagagagaaaagacccatggtcacagggacaggtgtggtgattcagaggga
gagtccctagccatctcccaccagcaaggctctggggggtccaactggcctcctgaccaa
ccagaggactcagacaaccagcgaaatgtcagacaaagtggccaaacctccatccaaatt
cctcctgtgactgtcacctccccacctggagagaccaccctcatacaaatgaacagtatt
gactgtgagacaatgcccacgaatgagaagaccctggaggatctaagtcaaagtggaccc
aaacccgtcctgccttacagttccatgttcatctttggacagaccaatccggtgagacgt
ttgtgtcattacattgtgactctgcgttactttgagatgtccatcctagttgtcattgct
atgagcagtattgctttggcagcagaggaccctgtctggacaaatgccccccgtaacaat
gtgctcaaatatctggactatgccttcactggtgttttcacttttgaaatggtgatcaag
atggtggacttgggcctgctgcttcatcctggatcttacttcagagacctctggaacatt
ctggacttcatagtggtcagtggggcgctggtggcttttgcattttcgagcttcatggga
tcgcaacaaggtgtgaccagggggaccaaaggcaaagacatcagcactatcaagtcactg
agggttctccgagtactcaggcctctcaagaccatcaaacgtctgccaaaactcaaggca
gtgtttgactgtgtggtcaactctctgaagaacgtgctgaacatcctcatcgtttacatc
ctcttcatgttcatctttgcggtcattgcagttcagctcttcaaaggaaaattcttctac
tgtacagatgagtccaagggcctggagaaggactgcaagggacagttcttggactatgac
aaagacgaggtagctgccatgcccagagagtggaaaaaatatgagttccattatgacaat
gtgctgtgggccttcttgaccctcttcactgtctccactggggagggctggccaactgta
ctgaaacactctgtggatgccacctttgaagaccagggtcccagtccaggctaccggata
gaaatgtccatattctatgtagtctactttgtcgtcttccctttcttctttgtcaacatc
tttgttgccttgatcatcattaccttccaggagcagggagacaaggccttgtctgagtgc
agcttggaaaagaatgagcgggcttgcattgactttgccataaacgccaaacctctgacg
cgctacatgcccgagaacacacagtccttccagtacaggatgtggaagtttgttgtctca
gctccctttgagtactccatcatgatcatgattgctctcaacactgtggtacttatgatg
aagttccatggagcttcagacttatatgaagtgatgctgaagaacctcaacatagtcttc
accattctcttcactctggagtgtatcctcaagataattgcttttggtccactgaactac
ctaaaggacgcctggaacgtgtttgactttgtgacagtgttgggcagtatcactgacatc
ttggtgactgaaatcaatactacggatagactgctgaatctgagcttcctgaggctgttc
agagctgctcggctcatcaagctgctgaggcagggctacaccatccgcatcctgctgtgg
accttcgtccagtccttcaaggccctgccttatgtctgcctgctgattgcaatgctgttc
ttcatttatgccatcattgggatgcaggtgtttggcaacattgaactgaatgaggacaca
gctatcaatcaccacaacaacttccgcacgttcctccaggctctcatgctgctgttcagg
agtgcaactggtgaggcctggcacgagatcatgttatcatgtttgagtcacagagactgt
gacgagcgatcagggtcccgtgggaaagagtgtggcagtgattttgcctacttctacttt
gtctcctttatcttcctctgttccttcctgatgctgaacttgtttgtggctgtcatcatg
gataactttgagtacctaaccagagactcttccatccttggacctcatcacctcgatgag
ttcatccgggtttgggccgagtatgacccagctgcgtgtggccgtatcaagtacctcgat
atgtatcagatgctgctccacatgtccccacccttaggtttgggaaagaaatgtccgcca
agagtcgcctacaagcgtcttgtcaaaatgaacatgcccattgctgatgacaacaccgtc
cacttcacttccaccctgatggccctgattcgcaccgccctggagatcaaactggcctca
ggtatggtagcccagcgattatctgacgccgagttaaagaaggagttgtccacagtgtgg
cccagcctttcacaaaagaccatggacctgttggtgacaccacataaacccaatgaactg
acagtagggaaggtttatgcagccctgatgattttcgactactacaaacagaatcgagca
aggaggctgcagcagcagcaacagaacacatcaggctcccagtgcaaggtcggggctctg
tttaagccattgctgcctctgactcacatgcaggagaaagacctgcctatgatgttaaac
agtgtggagcctcccagcatgcttcagccccagcccaaatctcatgccaagtcccagcca
cagaccagacctagctccaactccctcaacaatggaggcacgctgccatctcatgatcac
aacatcaaggcatcatcctcctgggtgatggagaaacccaaggaggtgccccaagctaag
actaaaagaagcatgtccagaggcccatcagaggacacaccagacactgctattattcag
gagtcagtggagctgaggaagatagagaccagcgccagcagcacaatcccagtccctggt
accggtctagagaaccagggcagagctgcttctatgcctcgactaaatgctgagctgcag
tggggccactcacgccactctccagggatccatctagcttctgtccctgatgccagccct
atgaagcgctcagcctccactgtagctccacaacgaccccacgtggtcaacctgagggaa
tataccctggagaaacccagccaggagcgaccccaccaccatcaccaccatcaccgctgc
caccaccgcagagacagagataaagacagagacagagacagagaaaagaggcagaggtcg
ttggatacacctctaggtggacaacctccaggctctgctggagaaccagcatctgaccca
gctgcctccagagagcgagcccatgaccgcgggcgctcccacgagaggaaacaccaccac
tcctcggcagataaacaccgctactactcctgtgaccgcttctgcagccgggaacactgc
cacaccaaaactgccactacaagttgtgctgcctcccccagcgaggggcaggaaaccagc
aacaagcagggcagtggttgggttaaaggcagcccagtggcaatgagttccagttctagt
acaccaagccatggacgtcggcagctgccccagacccccctcaccccacggccaggggtg
gcctacaagactgccaattcctcccccgtgcactgtgtgtccagccaggcctctctgagt
cccggccggctgagccgcggtctgtcggagcacaacaccctctggcacagcagctcccac
cacttcccctgtcccgtcactcgtatcagctctgagccctttctgggccggagccatggc
gatgccctgggtagcccctacagcagcctccaggaccagctggacgtcttccaggatgtg
gcgtcactgtcgcccagcccccgtgccggatgctcatctcggaccgcactgcctcgcatg
atgggagccctgcttccagctccacagcagaaccttggggtgcctaatgggtaccacttc
agcttcgggggcaacaccagcccaggctctggcgtcagggcacccaggtattacaaggag
gcagaggaggacgaatggtgctag
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integrated database retrieval system
