KEGG   Lates calcarifer (barramundi perch): 108878420
Entry
108878420         CDS       T04895                                 
Name
(RefSeq) splicing factor 3A subunit 1 isoform X1
  KO
K12825  splicing factor 3A subunit 1
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108878420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lcf03041]
    108878420
Spliceosome [BR:lcf03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    108878420
 Complex B
    108878420
 Complex C
   U2 SnRNP specific factors
    108878420
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin Rad60-SLD Ubiquitin_2
Other DBs
NCBI-GeneID: 108878420
NCBI-ProteinID: XP_018524611
UniProt: A0A4W6FQD9
LinkDB
Position
LG13:complement(15855742..15860796)
AA seq 790 aa
MPPGPVQIVQPESNNKNDVAAEETPATKPIVGIIYPPPEVRNIVDKTASFVARNGPEFEA
RIRQNEINNPKFNFLNPNDPYHAYYRHKVNEFKEGKAQEPSAAVPKVMQQAMQQSQQLPQ
KVQSQVIQETVVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQ
RNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLTKLKKEAENPREVMDQVRYRVEWA
KYQERERKKEEEEREKERVAYAQIDWHDFVVVETVDFQPNEQGHFPPPTTPEELGARILI
QERYEKYGESEEVEMEVESEDEEDDREGRDEGHPSQPDQDTQVQDMDEGSDEDDDGMKAP
LPPDNPMPPPLPPTPDQVIIRKDYDPKASKPQPSVAVPDEYLISPITGEKIPASKMQEHM
RIGLLDPRWLEQRDRIIKERQTEDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIG
EEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVGEDDTKEKIGPSK
PSEIHHQPPIPSSAASLPKPSPPVTAVPRPPSSFLVKQVAPPVRTTLLSAVPVIPRPPVA
PVVRLAPGQVITPMPPMIPAPRINVVPMPPSAPHIMAPRPPPMVVPAAFVPAPPVPQPPS
SAPAPPSHPPPPHEDEPVSKKMKTEDNLIPEEEFLRRNKGPVAVKVQVPNMQDKTEWKLN
GQVLNFTVPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMSNGSIIHL
ALKERGGRKK
NT seq 2373 nt   +upstreamnt  +downstreamnt
atgccgcctgggcctgttcaaatagttcagccggaatccaacaataagaacgatgtggca
gcagaagaaaccccagccactaaacccatcgttggtattatatacccacctcctgaggtc
cgaaacatagttgacaagacagccagctttgttgccaggaatggtcctgagtttgaagca
agaatccgtcaaaatgagatcaacaatccaaaatttaatttcctcaaccccaatgacccg
taccatgcctactaccgtcacaaggtcaatgaatttaaggagggcaaagcgcaggagcca
tctgcagcagtgcctaaggttatgcagcaggccatgcagcagtcccagcaactccctcaa
aaagtgcagtcacaggtgattcaggagacagtagtccccaaagaaccacctcctgagttt
gagttcatcgcagatcctccatcaatctcagcatttgacctggacgttgtcaagctcact
gcccagtttgtcgctcgcaatggccgccagtttctcactcagctcatgcagaaagaacag
aggaactatcagtttgactttctgcggccacagcacagccttttcaactatttcaccaaa
ctggttgagcagtacaccaagattctgatccctcccaaaggcctactgaccaagctgaag
aaagaggctgagaatcccagagaggttatggaccaggtgaggtaccgtgttgagtgggca
aaataccaggagcgtgagagaaagaaggaggaggaggaaagagagaaagaacgtgtggcg
tatgcccaaatcgactggcacgactttgtagtggttgagacggtggatttccagcccaat
gaacaaggccacttccctccacccaccacaccagaggagctcggcgctcgcatcctaatc
caagagcgctatgagaagtatggagaaagtgaggaggtggagatggaggttgagagtgag
gatgaggaggatgatcgggagggtcgggacgaaggccatccctcacaacctgatcaagac
acacaagtgcaggacatggatgagggatctgatgaagacgatgatggcatgaaggctcca
ctgccaccagacaaccctatgccaccccctctgcccccaactccagaccaggttattatt
cgcaaagactacgaccccaaagcttccaaacctcagccctcagtcgcagttccggatgag
tacctcatttcaccaattactggtgagaagatcccagccagtaagatgcaagagcatatg
cgcattggtctgctggatccacgctggctggagcagagagaccgcattatcaaagagagg
cagacagaggatgaagtctatgctcctggattggatatcgagagcagcttgaaacagctg
gctgagaggcgtaccgatatctttggtgtggaagagacagccatcggtaagaagatcggc
gaagaagaaatccagaagccagaggagaaggttacctgggatggccactctggaagcatg
gctcgcacacagcaagcagcacaggccaacatcaccctgcaagagcagatcgaagccatt
cacaaggccaaaggactggtgggagaggatgatactaaggagaaaattggcccaagcaag
ccaagtgaaattcatcaccagcctcccatcccctcctctgcagccagtttgcctaaaccc
agtcctcctgtcactgcagtgcctcgcccgccatcctcttttcttgttaaacaggtggca
cctccagtgcgcaccacactcctgtctgctgttcctgtaattccaagaccccctgtggct
cctgtggtccgacttgcaccaggacaagttataacaccaatgcctcccatgattcctgct
ccccgcatcaatgttgtccccatgccaccatcagcgcctcacatcatggccccaagacca
cccccaatggttgttccagcagcatttgtcccagctcctccagtgccacaaccaccaagc
tctgctcccgcaccaccttcccacccacccccacctcacgaggatgagccagtcagcaag
aagatgaaaacagaggacaaccttattccagaggaggagttcctgcgcagaaataagggt
ccagtggcagttaaagtacaggtccccaacatgcaggacaagactgaatggaagctgaat
ggccaagtgctgaatttcactgtccctctcacagaccaggtgtctgttattaaagtcaaa
atccatgaagcaacaggcatgccagcaggaaaacagaagttacagtatgaggggattttt
atcaaggattccaactccctggcttattacaacatgagcaatggctcaatcattcacttg
gcgctgaaggagagaggaggaagaaagaagtga

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