Lates calcarifer (barramundi perch): 108878441
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Entry
108878441 CDS
T04895
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
108878441 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108878441 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108878441 (pcdh11)
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108878441 (pcdh11)
Cell adhesion molecules [BR:
lcf04515
]
Cadherins
Protocadherins
108878441 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
TMEM154
DUF6249
DUF6377
Motif
Other DBs
NCBI-GeneID:
108878441
NCBI-ProteinID:
XP_018524667
UniProt:
A0A4W6DJ51
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All DBs
Position
LG8:complement(13343793..13470480)
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AA seq
1268 aa
AA seq
DB search
MDLASQAHVLVVLLTCVASLCWAQERDYTVKEEQPENVRIGNLRKDLDLNLDPNIRLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTNHRIDREKLCSGVFAEKRCYYEIEVAVLPDEIF
RLVKIRFLIEDVNDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVSEFGLDIIETPEGDKWPQLIVQQNLDREQKDTFVMKIKVEDGGNPPKSSTAILQVTIS
DVNDNRPIFKDSELEVTVPENAPMGTSVAQLHATDADLGSNAQIHFAFSNQISASTKRHF
AIDSSTGLITVKQPLDREVTPVHKLIVLASDGSSTPSRATVIVNVTDVNDNVPSIDTRYI
INLVNGTVLLSENAPLNTKIALITVTDKDADLYGKVACYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIKIVASDRGTPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPENND
PSTQLIKISATDADSGHNAEIIYTLGPDAPDGFNIDRRSGILSVGKRLDREKQERYSFTV
IARDNGSTSLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDADAG
DNAVITLSILNGKDNFIIDPQTGVIKPNITFDREQQSSYTFMVKAVDGGQPPSSSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVRTTTTPGAVVTRVFAIDNDTGMNAELQYSIISSII
ITSRVSPRGLFAIDKTTGNITLQEKIVAADQGLHRLVVKVKDLGQPESLHAIALIHLFVN
DTVSNATFIQEQLRKSMETPLDRNIGDSEVTPQANGYVIVVIAIIAGTMTVILVIFVTAL
VRCRQTPRHKVVQKGKQSGEWVSPNQENRQIKKKKKRKKRSPKSLLLNFVTIDESKPDDP
THEHVNGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPV
APKKHHVIQELPLDNTFVVGCDSLSKCSSTSSDPYSVSECSCQGGFKTSGQITTRQNPSQ
TPEKSFNSPPPICPHKEACQLGKITSVNTQRRVTFHLPDGSQESCSDSGLGDPEPSSTAS
TTQPLPLNFPQEEYYEQTSPNSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILGH
SDSCWMPPALAQFQGPGSNSPTSNPTTTAITGTLPSFGFQQSCARGAKANMVGMGVMDGR
HTLGRSVPKKDELDKGINRPQFYNTLDRHCSSKKEDPVKVIPLASFSSPGQQTPSSGGSS
SFLHEHQL
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggacttagcaagtcaggctcacgtgctggtggtcttgctcacctgtgtggcctcgcta
tgctgggcccaggagagggactacacggtgaaggaggagcagccggagaacgtccgcatc
ggtaacctgcggaaggacctggatctgaacctggacccaaacatcaggctatcctcgccg
ctgcagttcaagcctgtgtacaagacaggcgatgtgcctttggtgagagtggaggccaac
acgggggagatctttaccaccaatcacaggatcgaccgggagaagctgtgctcgggggtc
ttcgcagagaaacgctgctactatgagattgaggtggccgtgctgcctgacgagatcttc
cgtttggtcaagatccgcttcctgatcgaggatgtgaatgacaacgcaccccttttccag
tccactgtaataaacatctccatcccagagaacacagcaatcaacacccgatacccggtg
ccctcagcatttgaccctgatgtagggatcaatgggatccaacattatgaactggtcaag
agtgtgagcgagtttggcctagacatcattgagactcctgaaggtgacaagtggccacag
cttattgttcagcagaacctggatcgtgagcagaaggacaccttcgtcatgaagataaag
gtggaagatggtggcaaccctcccaagtccagcactgccattctccaagtcaccatctct
gatgtcaatgacaatcgccccatcttcaaggacagcgagctggaggtcacagtgccagag
aatgcccccatggggacatcagttgctcagcttcatgccacggacgcagacctgggttcc
aatgcccagatccactttgccttcagcaaccagatctctgcctcgaccaaacgtcacttt
gccatcgacagctctacgggactgatcactgtgaagcagccactggacagggaggtaact
cccgttcataaactcatcgtcctggccagtgatggcagctccaccccctccagagccaca
gtgattgttaatgttacagacgttaatgacaatgttccctccatagacactcgctacatt
atcaacctggttaatgggactgttctgctgtctgagaatgcacctctcaacaccaaaata
gccctaattactgttactgacaaggatgcagatctttatggcaaagtcgcttgctacact
gaccatgatgttcccttccggttgaagcctgtctttaatgatcagttcttactagagaca
gctgcccccttagattatgagacgacccgagaatatgcaattaagatagtggcctcggat
agagggacgcctcctttgaacacttcagctatggttttaattaaaatcaaggatgagaat
gacaatgcacccatcttcccccagccggaaatccaactatccataccggagaacaatgac
ccctctacacagttaataaaaatcagtgccactgacgcagacagcggacataatgctgag
attatttatactcttggccctgacgcacctgatgggtttaacatagacagacggtcagga
atcctctctgttggcaaacgactggacagagagaagcaggagaggtactcattcactgtc
atagcgagggacaatggctccacatccctacagagcaatgtcactgtcaggctaatcgtc
caggaccttaatgacaacagcccagctttcacgcaccccgagtacaacttctatgtgcct
gagaacctgcctctctatggaactgtgggcttaatcacagtgacggacgcagatgcggga
gataatgctgttataaccctgtccattttgaacgggaaagataatttcatcatcgacccc
caaaccggtgtgatcaaacccaatatcaccttcgacagggagcagcaaagctcctacaca
tttatggtcaaggcagttgatggagggcaacctccaagctcctcctatgccaaggtcact
atcaatgtagtcgacgtaaatgacaatcgccctgtgttcgtcattccatcctccaattac
tcatatgacctagtgcgaaccaccaccacccctggcgctgtggtcaccagagtttttgcc
attgacaatgacacgggtatgaatgctgagctgcagtacagtattatcagcagcatcatc
atcacatctagggtctcccctcgaggtctcttcgccatcgacaaaacaacgggtaacata
acactacaggagaaaatagtggcagctgatcaggggctgcataggctcgtagtcaaggtc
aaagatctaggccagcctgagtcattacatgctatagcacttattcacttgtttgtcaat
gacactgtgtcaaatgctacatttatccaagagcagctgcgaaaaagtatggagacaccc
ttggatcgtaacataggggacagtgaggtaacacctcaagccaacggatatgtgattgtt
gtcatagctatcatagcagggaccatgactgtcatcttggtgatatttgtgactgccttg
gtgcgctgtcggcagacacccagacacaaagtggtacagaagggcaagcagagtggcgag
tgggtgtcacccaaccaagagaaccgtcagatcaagaagaagaagaagagaaagaagcga
tctcccaagagcctcctcctgaactttgtgaccatagatgaatccaagcctgacgacccc
acccatgagcatgttaatggcacactggatctccccgtggagctagaggagcaaaccatg
gggaagtacaactgggccaccacgcctaccaccttcaaacccgacagcccagatttagcc
aagcattacaagtccgcgtcccctcagcctacatttcaaatcaaaccggagactccagtg
gccccaaagaaacaccatgtgatccaggagctccccttggacaacacgttcgtggtgggc
tgtgactcactctccaagtgctcatcaactagctccgacccatacagtgtctcagagtgc
agctgtcaggggggattcaagacttcagggcaaatcaccacccgacagaatccgagccag
acgccggagaagtcttttaactcgccgccccccatttgtcctcataaggaagcctgtcaa
cttggcaagataacctctgtgaatactcagcgccgtgtgacgttccatctcccggacggt
tcccaggagagttgcagcgatagcgggctgggagacccagagcccagcagcacggccagc
accacccagcctctccccctcaacttcccccaggaggagtactacgagcaaacatcacct
aacagccgcaccgagggagatggaaactcagaccccgaatccaccattgaggtgaacctg
cagaaagccttggctgaggcctctgagacctgtacccaggagtgtctgatactgggccac
tccgacagctgctggatgcccccggccctggcccagttccagggtcctggcagcaacagc
cccacctccaaccctaccaccaccgccatcaccggtaccctcccctcctttggcttccag
cagagctgcgcccggggagccaaagctaacatggtcggcatgggggtcatggatggccgc
cataccctgggcaggtctgtgcccaaaaaggatgaactggacaaagggatcaaccggccg
cagttctacaacaccctggatagacactgcagtagtaagaaggaggaccccgtcaaggtc
attcccctggcgagcttttcctcccctgggcagcagacgccctccagtgggggcagcagc
tctttcttacatgagcaccagttgtaa
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