Lates calcarifer (barramundi perch): 108878466
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Entry
108878466 CDS
T04895
Name
(RefSeq) GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108878466
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
108878466
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGAP
VPS9
DUF5601
DUF5740
Motif
Other DBs
NCBI-GeneID:
108878466
NCBI-ProteinID:
XP_018524727
UniProt:
A0A4W6FNM9
LinkDB
All DBs
Position
LG13:15986205..16014424
Genome browser
AA seq
1475 aa
AA seq
DB search
MVKPDIHTLAHHLKQERLYVASEKQLIQRLNSDVLKTAERLYRAAWIAKQQRINLDRLIL
TSAEASPAECCQHAKMLEDTQFIDGYKTLGFQETIYGEFLARLRENPRLVASCLVAGERL
NQEHTQGVIHTVFTSLYGNCIMQEDESYLLQVLRYLIEFELKESDNPRRLLRRGTCAFSI
LFKLFSEGLYSAKLFLTATLHEPIMQLLVEDEDHLETDPAKVTERLTPAQQERFGEKGSE
GYKQRVQAAVEANEAKLVALVNKFIGYLKQNTYCFPHSLRWIVSQMYKTLSCVERLEVGE
VRTMCTDLLLTCFICPAIVNPEQYGIISDAPINEVARFNLMQVGQLLQQLAMADDDADPR
RKSSLSKFDKSCVAAFLDVVIGGRAVETPPMSSMNLLEGLSRTVVYITHNQLLALVDFVR
SVTAGDHLREEEHMALENLLANVPQSRTVKSNSLELTPSNTPQLSPATTPANKKNRLPIG
QHLAAITSWDPTTTTLSAHIPLVTPFAAARSRSRTNIAQEGEAEASSQESLQELMPEEVL
VISLGTGPQNVPGMMSENEVLNLQMADGAQGDGHADDTKLHGKPDKTLRFSLCSDNLEGI
SEGPSNRSNSVSSLDLEGESVSELGAGPSGSNGVEALQLLEHEQATTQDNLDDKLRKFEI
RDMMGLTDDRDISETVSETWSTDVLGSDFDPNMDEDRLQEIAGAAAENMLGSLLCLPGSG
SVLLDPYGSTISETTSEAWSVEVLPSDSEAPDLKQEERLQELESCSGVGSTSDDTEVREV
SSRPSTPGLSVVSGISATSEDIPNKIEDLRSECSSDFGGKDSVTSPDGEESGHGAHHLTS
PPSQADTLLAMFDPLSSGEGSSTGTIVRPKVHYARPPHPPPDPPIPEASALGQETRHSLF
TPHCLAQAELEHTKQRHSFPDRLVRSRSSDIVCPGRRPTSDPGLNRRVAVEERDPAGAFA
LGPSSSPSKDSLKGEAEDRKDSDDEKSDRNRPWWKKRFVSAIPKAPIAAFRKRDRQEKDD
IAQERIPQDDPLPRQSTQAQAAEDILDKYRNIKRPSPSDGAAAGASYDGTGDLCVEDSVH
DSPREDTLQNISTDDLPDSASQTAQQHDSKFSFSDAKKKLRLALCSADSVALPIMAPATT
RNGLPDHMDPEDNEIVCFLKVQLAEAINLQDKNQMAQIQETTRCVSRFDARTCRKLLAAI
AEDYRKRAPYIAYLTRCRQGLQTSQAHLERLLQRVLRDKEVANRYFTTVCVRLLLEHMES
KMLDFIKAFQGCTAADDKTAAVEDFLRYLYGAMARDAIWQYASEDQLQDAQMAIERSVMN
RIFKLAFYPNQDGDILRDQLFHEHIQRLSKVVTATHKALQIPEVYLKEAPWPSAQSEIRT
INAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADDFVPVLVFVLIRANPPCLLSTVQ
YINNFYASRLSGEECYWWMQFTAAVEFIKTIDDRK
NT seq
4428 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagccagacattcacactctggcccaccacctgaagcaggagaggctgtatgtg
gcatcggagaagcagctaatccagaggctcaacagtgatgtgctgaagacagccgagagg
ctgtaccgggctgcatggatcgctaagcagcagaggatcaaccttgatcgtctcattctc
accagcgcggaggcctctccagctgaatgctgccaacatgccaaaatgctggaagacaca
cagtttattgatggctacaagactctgggcttccaggagacaatctatggtgagtttttg
gcccggttgagggagaatcccagactggtagcttcctgcttggtggcaggagagaggctg
aaccaggagcacacccagggggtcatccatacagtcttcacctcactctatggcaactgt
atcatgcaggaggatgagagctatttactacaggtgttgcggtacctgatagagtttgag
ctgaaggagagtgacaaccctcgtcgtctgctgcgacggggaacctgtgccttcagcatc
cttttcaagctcttctctgagggcctgtactcagccaagctcttcctcactgccaccctc
catgaacccattatgcagctgttggtggaagatgaagaccacctggagacggacccagcc
aaggtcacagagcgcctcactccggctcagcaggaacgctttggagagaagggctctgag
ggctacaaacaaagggtgcaggcagctgtggaagccaatgaagctaagctggtagctctg
gtcaacaaatttatcggttacttgaagcagaacacctactgctttccccacagcctgcgc
tggatcgtgtcccagatgtacaagacgttgtcatgtgtggagcgtcttgaggtaggtgag
gtacgcaccatgtgtacagacctgctgctgacctgcttcatctgtccagccatagtcaac
ccggagcagtatggtatcatctcagacgcccccatcaatgaagtggcccgcttcaatcta
atgcaggtggggcagcttttgcagcagttggcaatggctgatgatgatgcagacccaaga
cggaaaagcagtttgtccaaatttgataagagttgtgttgctgcctttctggatgtagta
atcggaggaagagcagtggagaccccacccatgtcctcaatgaaccttctagagggcctc
agcaggactgtggtctatattacgcataatcagctgctggcactggtggactttgtacgg
agtgtgactgcaggggaccatctccgggaggaggagcacatggctctggagaacctgctg
gccaatgtgccccagtctcggactgtgaagagtaacagtctggagctcactccctccaac
acccctcagctttcaccggctaccactcctgccaacaagaagaacaggctccccatagga
caacacttagctgctataacatcctgggatcccacaaccaccactctgtctgctcacatt
ccattagtaaccccttttgcagctgctcgtagccgcagccgtaccaacatagcccaggag
ggggaggcagaggccagctcccaagagtccctacaggagctgatgccagaggaggtgctg
gtgatttcactaggaacaggtcctcagaatgtccctgggatgatgtcagagaatgaggtt
ttgaatctgcagatggctgatggggcccagggggatggccatgctgatgataccaagctg
catggtaaaccagacaaaaccttgcgcttttccctctgcagtgacaacctggaaggcatc
tcagagggtccatctaaccgttctaactccgtatcatctctggacctggagggagagtct
gtttcggagctgggagctggaccatcaggcagcaacggggtggaggctttacagcttctg
gagcatgaacaggccaccactcaggacaacctggatgacaaactccgcaagtttgagatc
agagatatgatgggtctgacagatgatcgggacatctctgagacagtcagcgaaacctgg
agcacagacgtgcttggtagcgactttgaccccaacatggatgaagatcggctgcaggaa
atagcaggggcagctgcggagaacatgctcggcagcctgctgtgtcttcctggctcgggt
tcagtgctgctggacccctatggctccaccatctccgagaccacaagcgaggcctggagc
gtggaggtcctgcccagtgactcagaggccccagacctgaagcaggaggagcgtctgcag
gagctggagagctgctcaggggtcggcagcacctcagatgacacagaggtcagagaggtc
agctcaagacccagcacaccaggcctcagtgttgtctcaggtatcagtgcaacctcagaa
gacatcccaaacaagatcgaggacctgcggtcagagtgcagctcagactttggagggaag
gactctgtgaccagtccagatggggaggagtcaggccacggagcacaccatctgacatct
ccaccatcacaggccgataccttactggccatgttcgatcccctctcctccggtgaaggc
tcctccactggaacaatagtgaggcccaaagtgcactacgccaggccccctcaccctcca
cccgaccctcccattcctgaagccagtgccctggggcaagagacacgccactctctcttc
acgccccactgcctggcccaggctgagctggagcacactaagcagcgccactccttccct
gacaggctggtccgtagccgcagctctgacatcgtgtgcccaggccgccggcccacaagt
gaccccggccttaaccggcgggtagcagttgaagagcgtgaccctgccggggcctttgcc
ttaggaccctcctcgtcccccagcaaggactccctgaaaggagaggctgaggacaggaag
gacagtgatgacgagaagtctgatcgcaaccgaccatggtggaagaaacgttttgtgtct
gccattcccaaagctccaatagcagcatttaggaaaagggacagacaggagaaagatgat
attgcccaggagcgtattccacaagacgatccattgcccagacagagcactcaagcgcag
gcagctgaagacatcctggacaagtacaggaacatcaaaaggcccagcccgagtgatgga
gctgcagctggagcttcctatgacggtacaggagacctttgtgttgaagacagtgtgcat
gactctccgagggaggatactctgcagaatatttccacagacgacctcccagactcagcc
agccagacggcgcagcagcatgactccaagttctctttcagtgatgcaaagaagaagctg
aggttggcgttgtgttctgctgactcggtggctttgcccatcatggctcctgcaaccaca
cgaaatgggctgcctgaccacatggatcctgaagacaatgagatcgtctgcttcctgaag
gtccagctcgcagaggccatcaacctccaggataagaaccagatggcccagattcaggag
accacgcgctgcgtcagccgtttcgatgcgcgcacctgcaggaagctgctggctgccatt
gcggaggattacagaaagcgggcaccgtacatagcttatctaaccaggtgtcgtcagggc
ttgcagacctctcaggcccatttggagaggctcctccagagggtgcttagagacaaggag
gtggcgaaccgctacttcaccactgtctgtgttcggctccttcttgaacacatggaatcc
aagatgcttgactttattaaggcgttccagggatgcacagcggcggatgacaagacggca
gcagtggaggattttctccgctacttgtacggtgccatggcccgtgatgccatttggcag
tatgcaagcgaggaccagctgcaggatgcccagatggctatcgaacgcagcgttatgaac
cgcatcttcaaactggccttttaccccaaccaggatggagatattctcagagaccagctt
ttccacgaacacatccagcggctctcaaaagttgtgacggccactcataaagctcttcaa
atcccagaggtgtacttgaaggaagctccctggccctctgcacagtctgagatcaggacc
atcaatgcatacaagacgccacgagacaaagtccagtgtatactgcgcatgtgttccacc
atcatgaacctcctcagtctggccaatgaagactctgtccctggagcggatgactttgtc
cccgtacttgtctttgtcctcataagggcaaacccgccctgcctgctgtccaccgttcag
tacatcaataatttctacgccagccggctgagtggggaggagtgctattggtggatgcag
ttcaccgcggcggtggaattcattaagaccatcgacgatcgcaagtga
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