Lates calcarifer (barramundi perch): 108878468
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Entry
108878468 CDS
T04895
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1 isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108878468
03041 Spliceosome [BR:
lcf03041
]
108878468
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
108878468
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
108878468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Calcipressin
Nup35_RRM
Nup35_RRM_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
108878468
NCBI-ProteinID:
XP_018524731
UniProt:
A0A4W6E3E3
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Position
LG13:complement(19593493..19602569)
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AA seq
387 aa
AA seq
DB search
MMEDDQPRTLYVGNLSRDVTEPLILQVFTQIGPCKSCKMIVDTAGNDPYCFVEFYDHRHA
AASLAAMNGRKIMGKEVKVNWATTPTSQKKDTSNHFHVFVGDLSPEITTDDVKAAFGPFG
RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK
TTYENNSKHLSFDEVVNQSSPSNCTVYCGGVSTGLTEQLMRQTFSPFGQIMEIRVFPDKG
YSFVRFNSHESAAHAIVSVNGTSIEGHIVKCYWGKETPDMMNPIQQMPMPQQNKMGFAAA
QPYGQWGQWYGNGPQISQYVPNGWQVPTYGVYGQAWNQQGFNHLPASAGWTGMSAISNGG
VMEPTQGLNGSMLANQPGMGAAGYPTH
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggacgatcaacccagaaccttgtatgtggggaatctgtccagggatgtcacc
gagcccctcatcctacaggtcttcacacagataggaccctgcaagagctgtaaaatgata
gttgatacagctggaaatgatccgtactgttttgtggagttctatgaccacaggcatgct
gctgcctcactggcagccatgaatggaaggaaaataatgggtaaggaggtcaaagtcaac
tgggccacgacgccaaccagccagaaaaaagacacaagtaatcactttcatgtcttcgtt
ggagacctcagcccagaaataactacagatgacgtcaaagctgccttcggcccatttggc
aggatatcagatgctcgagttgtgaaagatatggctacaggaaaatctaaaggctatggc
tttgtgtctttcttcaacaaatgggatgcagagaacgccattcagcagatggggggtcag
tggttaggaggcagacagattcgaactaactgggccacaagaaagccccccgccccaaag
accacctatgaaaataactccaagcacctatcctttgatgaagtagtcaatcagtccagc
cccagtaactgcactgtgtattgtggtggagtcagcacaggactgacagagcaactgatg
agacagaccttctctccctttggacaaatcatggaaatcagagttttcccagacaaaggc
tattcatttgtgaggtttaactcccatgagtcagcagcccatgccattgtgtcagtgaat
ggcacttcaatagagggccacatagtcaaatgctactggggtaaagagaccccagacatg
atgaacccgattcagcagatgcctatgccccagcagaacaagatgggctttgctgcagcc
cagccctacggccaatggggccagtggtacggcaacgggccccagattagccagtacgtc
ccgaatgggtggcaggtccccacctacggcgtctacggccaggcttggaaccagcagggc
ttcaatcacttaccggccagtgctgggtggactggcatgagcgccatcagtaacggtggg
gttatggagcctacacagggattgaatgggagtatgctagccaaccagcctggtatggga
gccgcaggataccccacacactga
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