Lates calcarifer (barramundi perch): 108878482
Help
Entry
108878482 CDS
T04895
Name
(RefSeq) squamous cell carcinoma antigen recognized by T-cells 3
KO
K22611
spliceosome associated factor 3, U4/U6 recycling protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108878482
03036 Chromosome and associated proteins [BR:
lcf03036
]
108878482
Spliceosome [BR:
lcf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
108878482
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
108878482
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
LSM_int_assoc
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
RRM_occluded
Lsm_interact
RRM_11
Motif
Other DBs
NCBI-GeneID:
108878482
NCBI-ProteinID:
XP_018524748
LinkDB
All DBs
Position
LG13:complement(10477221..10485358)
Genome browser
AA seq
1021 aa
AA seq
DB search
MNGNQRVRTSGEDGVFVDKQAKKGGFTDEGAPTSGQQQSLHVRGSSASSATGSASYRAAA
GLLGCYQADSLSNMAASSNAEQTQLQDMEEEDAGMEEREMESDEEEEEGMGVENSDDDED
DSSEDEKENEAEIQRLEEQLSINAFDYNCHVDLIKLLKQEGELFRLRKARQKMSELFPLT
EEIWLDWLKDEIRLTEEEPNREKVYDLFERAVKDYICPDIWLEYAQYSIGGMGSPGGIDK
VRSIFERAVTAVGLHMTKGQTVWEAYREFENAILSTVQPPPGRIPSREEQELLNTQLERI
HTLFRRQLAVPLMDMEATYAEYEEWSEHGVPDTVIHQYKKALQQMEKCKSFEESLLVAEP
PKLAEYQAYIDFELKEGDPARIQITFERTLAENCLVPDMWAKYTTYLDRQLKVRDLVLST
HERAVRNCPWTMGLWKSYLLALERHGADHQVVSDVFEKALNAGFIQATDYVEIWQAYLDY
LRRRVDFSKESSKELEELRGAFSRSLDYMKQDVEERFGESGDPSCIIMQIWARIEALHCK
NMQKARELWDSIMTKGNAKYANMWLEYYNLERSYGDSVHCRKALHRAVQCTSDYPEHVCE
VLLTFERVEGSLEDWDVAVQKTETRLNRINEQRAKVAEKEANLARQEEERAEQRRKAKSD
KKAQKKVQKGTRFGEKRKAEQDDYQDEWNDDSEQAPKRHRGNGDQTTEEYMETETGLFGR
NAPPGYKPAPPGTKKDQAAAAAAQRHNDDKPELRNDNSSVFISNLAYTLEEPETKLRTLF
ETCGPIKQIRPVFSNRGSFKGYCYVQFESPVSVAEALKLDRREVEGRPMFVSPCVDKNKN
PDFKVFKYNTSMEKHKIFISGLPFSCTKEQLEEICKIHGTIKEVRLVTYRSGKPKGLAYV
EFGDETQASQAVLKMDGMEVGDNKISVAISNPPRRNLMDKPGSSRTTTDMMPRQVFGSRG
RGRTQLSLLPRSLHRQSGAVSKVENGTAAEQVPAAASVSVNAPSETKPLSNSDFAKMLLN
K
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgaacggaaatcaacgagtgcgcacgagcggggaggatggggtttttgttgacaaacaa
gcgaagaagggaggtttcaccgacgaaggagcccccactagcggccaacaacagtcgtta
cacgttaggggatcctctgcgagttcagcgacgggctccgcctcttaccgtgccgctgct
ggcttgttaggttgttaccaggcagacagcctttccaacatggcagcgtcaagcaacgca
gagcaaacgcagttgcaagatatggaggaagaagatgcagggatggaggagagagagatg
gaatcggacgaagaagaggaggaaggcatgggagtagaaaattcagacgacgatgaggac
gattcgtctgaagacgagaaggaaaacgaagccgaaatccagcggctggaggagcagctg
tcaatcaatgcttttgactacaactgccatgtggatctcatcaaactgctgaagcaggag
ggagaacttttccgactgcggaaggcaaggcagaagatgagcgagcttttccctctcact
gaagagatctggctggattggctcaaggatgagatccgtctgactgaggaagagccaaac
cgggagaaagtatatgacctttttgagagagctgtaaaagactatatctgtccagatatc
tggcttgaatatgctcagtattcaattggtggcatgggctcaccaggtgggatagacaag
gtgagatccatttttgagagagccgtgacagctgtggggcttcacatgaccaagggacag
acggtgtgggaggcatacagagagtttgagaacgccatcctatccacagtacagcctccc
cctggcaggattcccagtcgcgaggagcaggagctgctgaacactcagcttgagcgaatc
catacactgttccgccgccagctggccgtccccttaatggacatggaagccacctacgca
gagtatgaggagtggtctgaacatggggtgcctgacacggtcatacatcaatacaaaaaa
gctttgcagcagatggagaagtgcaaatcttttgaagagtcactgcttgtggcagagcct
cccaagctggcagaatatcaggcctacatcgactttgaactaaaggagggcgacccagca
cggatccagataacctttgagcggactctggctgagaactgcctagtaccagacatgtgg
gcaaaatacaccacctatcttgatcgtcagctgaaggtcagagacttggttctttctact
catgaacgtgccgtaaggaactgcccctggaccatgggtctgtggaagagttacctgctg
gctctggagaggcatggagctgatcatcaggttgtctcagatgtttttgagaaggctctg
aatgcaggtttcattcaggctacagattatgtggaaatttggcaggcgtacctcgactac
ctgaggagacgtgtggatttcagtaaagaatcaagtaaagagttggaggagttacgagga
gccttctctcgatctctagactacatgaagcaggatgtggaagagagatttggtgaaagt
ggagatccctcttgtataataatgcagatctgggcaaggatagaggccctccactgcaag
aacatgcaaaaagccagagaactgtgggacagtatcatgacaaaagggaacgccaaatat
gccaacatgtggctggagtactacaaccttgaaaggtcttatggagactctgttcactgt
cggaaagctcttcacagagcagttcagtgcacctcagactatccagagcacgtctgtgaa
gtcctgctcacctttgagagggtggaaggttctctggaggactgggatgttgcagtgcag
aagacagagacccggctgaacaggattaatgagcagcgagcaaaggtggctgagaaagaa
gccaacctggctcgccaagaggaggagagagctgagcagcggcggaaagccaagtcggac
aagaaggctcagaagaaagtccagaagggaactcgattcggggagaagaggaaagcggag
caggatgattatcaggacgaatggaatgacgattcagaacaagcccctaaaaggcacaga
ggaaatggggaccaaaccacagaggagtacatggagaccgagacaggactttttgggaga
aatgctcctccaggctataagcctgctccacctggcactaagaaagaccaggcggcggcg
gcggctgcccagaggcacaacgatgacaagcctgagcttcgaaatgataacagcagcgtt
ttcatcagcaacttggcatacaccctggaggagccagagacaaagctcaggacactgttc
gagacctgtggtcccatcaaacagattcgccctgtcttcagcaacagaggcagcttcaaa
ggttactgctatgtacagtttgaatccccagtgtcggtcgctgaagccctgaagctggac
agacgcgaggtggagggcaggcccatgtttgtgtcaccttgtgtggataaaaacaaaaac
cctgactttaaggtgtttaaatacaacacatcaatggagaaacacaaaatcttcatctct
gggctgccgttttcgtgcactaaagagcagctggaggaaatctgcaaaattcacggcacc
atcaaagaagttcgtctggtcacatatcgctcagggaaacccaagggtctggcatatgtt
gagtttggagatgaaacccaggcgtctcaggcagtactgaaaatggacgggatggaagta
ggggacaacaaaatctctgtggctataagtaaccctcctcgcagaaacctgatggataaa
ccagggtccagcagaaccacgacagacatgatgcctcgccaggtcttcggatcgagagga
agaggacgcacccagctgtcactgctccctcgttccctgcaccgacaaagcggggctgtg
agcaaggttgagaacggaaccgcggccgagcaggtgccggcggcagccagcgtgtcagtg
aacgcgccctcagagacgaaacctttgtcaaattcagactttgccaagatgcttctcaac
aagtga
DBGET
integrated database retrieval system
