Lates calcarifer (barramundi perch): 108878498
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Entry
108878498 CDS
T04895
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03420
Nucleotide excision repair
lcf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108878498
09124 Replication and repair
03420 Nucleotide excision repair
108878498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108878498
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108878498
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
108878498
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
108878498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_C
ANAPC4_WD40
NBCH_WD40
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_RIG_1st
Beta-prop_WDR19_1st
WD_LRWD1
Beta-prop_WDR75_2nd
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
108878498
NCBI-ProteinID:
XP_018524782
UniProt:
A0A4W6BX23
LinkDB
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Position
LG13:7109123..7121893
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AA seq
401 aa
AA seq
DB search
MLGFLTARQAGLDDPLRLRRAESTRRVLGLKLNPDRDVDRVHGNGINTIDIEAIEGRYML
SGGADGVIVIYDLENCSGKPQYTCKAVCTVGRSSRYVHKFSVETVQWYPYDTGMFVSSSF
DKTMKVWDTETLKPAEVFEFEGNVYSHHLSPIARKHSLVAVGTKNPKIQLCDLKSGSRIH
VLQGHRAEVLSVRWSPRYEHILATASADSKVKVWDVRRASGSLFTLDQHNGDKSKAASEA
VNTAHNGRVNGLCFTGDGLYLLTTGTDDRMRLWNSATGENTLVNYGKVCNESRKRLQFTV
SRGCSPEFVFVPCGSSVAVYALHTGELVTMLRGHYNNVDCCEFHPDYQELYSGGKDCNIL
AWIPVLRASDVEEESNCTNQAAAGQSSVNPAFQDAWSSDED
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgttgggatttttgacagcaaggcaggctggactggatgacccactgcgactgcgacgt
gcagagtcaacgagaagggtccttggtctgaagttgaatcctgacagagatgtagaccga
gtccatggaaatggcatcaacaccattgacattgaagcaatagaaggcagatacatgttg
tctggaggtgcagatggagtaatcgttatctatgacctggagaactgcagtgggaaacca
cagtacacctgcaaggcagtctgcacagtgggcaggtctagccggtatgtccacaaattc
agtgtagagacggttcagtggtatccttatgacacaggcatgtttgtctccagttccttt
gataagaccatgaaggtctgggacacagagacactgaagcctgctgaagtctttgagttt
gagggcaatgtctacagccaccacctgtcccccatcgccaggaaacacagtctcgttgca
gttggcaccaaaaaccctaaaatccagctgtgtgacctgaagtctggttcacggattcat
gttcttcagggtcacagagcagaggtcctgtctgtgcggtggtcgcccagatatgaacac
atcttggccaccgccagtgcagacagcaaggtcaaagtatgggatgtgcgtcgggcttct
ggcagtctcttcactctggatcagcacaatggagacaagtcaaaagccgcctctgaggca
gtgaacacagcccataatggcagagtgaatggcctgtgcttcactggtgatggcctttac
ctcctcacaactggaactgatgaccgtatgagactatggaatagtgccactggggaaaac
acactggtgaattacgggaaggtctgcaacgagagtcgaaaaaggctacagttcacagtg
tcacgtggctgcagcccagagtttgtgtttgtgccgtgcggcagctccgtcgcagtgtac
gccctacacaccggagagctggtcactatgctaaggggtcactacaacaacgttgattgc
tgcgagttccacccagactaccaggagttgtatagtggaggtaaagactgtaacatcctg
gcgtggattcctgtccttcgtgcctcagatgtggaggaagagtcaaactgtacaaatcag
gctgctgctggccagtcttcagtgaaccctgcctttcaggatgcatggagcagtgatgaa
gattaa
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