Lates calcarifer (barramundi perch): 108878502
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Entry
108878502 CDS
T04895
Symbol
si:ch211-166a6.5
Name
(RefSeq) clustered mitochondria protein homolog
KO
K03255
protein TIF31
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
lcf03012
]
108878502 (si:ch211-166a6.5)
Translation factors [BR:
lcf03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108878502 (si:ch211-166a6.5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLU
eIF3_p135
TPR_10
TPR_12
TPR_NPHP3
CLU_N
GSKIP_dom
TPR_4
Motif
Other DBs
NCBI-GeneID:
108878502
NCBI-ProteinID:
XP_018524789
UniProt:
A0A4W6GB61
LinkDB
All DBs
Position
LG13:11108952..11119840
Genome browser
AA seq
1434 aa
AA seq
DB search
MKDKVRRGGGRNQAKTDVIGVTGGKNAVGIKHDENTSFPVKIQGAGVEPFELQVHGFWLV
QDAIMTLLSRNEVCPRSSLSLALAGMTLDPLVELQSLKSLKPGAIVRLVEEPYTASSARL
HLARVLDLLRASGPQDALREGRSPSVLETITHTQTQDSSLPNGKSLKRSLSNTKTESTNQ
DGAPPEYLLPGSSERPLMAVLPHSSQPEAPSYLKDLSLSCWNPPPGHRKLQGDFLYISVV
TIEGRRCEITSCPKGFFLNRSTEDVFDPRPAQSSPVCHCFTDLLCHISPAFKQTFTTLKN
RPQLPPVEVIPTPYHTLSWLGPPCASRTHKNTFSRLGVDEQAARQAPDWNEELQAARDLP
QGTREERLQRDRAVIQVNSAFVRAVMQGAETVVDGFVEPVNGNPEDPAFLWGGLFMSQGA
ASMVFGGERGRRATQRLELKGVQAYSELEGLEGLHTLPTAVVDYRGVRLSAQGLAPGLEG
SEQDQETTPASRGLLYGVNAGPQESPQRRRLLALLAHAAKSLSLQRHVVVAPNDHKIPLF
TSVDAQGLLGADGRFYILDVFRTFPADANFCPEAEMESQTVTGEEEKKESCEDEEKKDSV
KEGWPENYHMDSGLPKSFPHSLCRLRPELVQAFIQHKHCQFTERVRERLDDNGGFEECAT
ACDSRATDAVRAACKDVGSVSDIIFEMRFNPNIFSPGVSFPPGESASTNLQERLLREAAA
FIITHQIPAFVEHCLQNHEAPMDGASLKQALHQQGINLRYLGHVIKAINQSEHKERLRHI
MRLVIGEIFIRSTRRVFNSFLQGVDVPSLSAAVSHFLCCLLVPHFTPTPVGEETKKKSRR
RGRGAGASESTPWSTLTGAELWNLVCQDAVETYNISDSLGSGPSHLVEHYGLQRLSLLRE
FCLKNGVQLRLRDYILDNQNKAPIGPDDVLNIFPVVKHVHMPTVDASKAFSAAQNSIRKG
LLDQAYEQLTEAAYLFGRVCDDLQPEACYCHSLLARVAFLQGKAAEARSVQLKAVVISER
VLGFDHPNTIQQYTLLGVYVYAGGETALAQKCLLRARLLMLTVHGEDHPYTAILDNCLGL
VLTGDQTEQFLKNALRLNTSFFGPTDLHTALNQHLLAQRMCSKGDYRGAMTHEKEALTAF
TSLFGEDHPQSRCSKEFLCAITKQAVQVERSLRQAGADCTEQTVECLTPTTDTILEQMVL
VTGIRRITQSDRLQEYKKKHLERKAAAARELGFNLNYEPIASETVKGGEKSSDQETGRGK
EAQEGGSPAVENNSESQQEEDVSVESAAEIPANGHVVESADQDQHDEKRDVDGGNSEESD
RAASDAEVKLVNGESEVRAAGEETETSVQNGVEGSTANGEVKSEATCNEMKSDEKDGEIN
GAVNVTASPPVLKSKGTWADVVVSKAVMTNGTGDKGTAVNGVADRVTANGAAEK
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacaaagtgaggagaggaggaggaagaaatcaggctaagactgatgtaatcggt
gtgactggtggaaagaatgctgttggtattaagcatgatgagaacacatcattccctgtg
aagatccagggagcaggagtagagccatttgagctgcaggttcacggattttggcttgtc
caagatgcaataatgaccctgctttcgaggaatgaggtgtgtccacgctccagcctgtca
ctggctctagctggtatgactttggatcccctcgtggaactgcaaagcctcaagagccta
aaaccaggagccatcgttcgcctggtggaagagccctacactgccagctcagccaggctc
catctggctcgtgtcctggacctgctgagagcatctggaccccaggatgcactgagagaa
gggcgctcaccgagcgtactggagacaatcacgcatacacaaacacaagactccagctta
ccaaacggaaagagcttgaaacgctctttaagcaacacgaaaacagaatcaaccaaccag
gatggagctcctcctgaatacctccttcctggctcctcagaaagaccactcatggccgtg
cttccacatagctcccagccagaggctcccagttacctgaaggacctgtccctcagctgc
tggaacccgccaccaggacacaggaagctgcagggagacttcctgtacatctctgtggtg
acaatagagggacggcggtgtgagatcacatcctgtccaaaagggtttttcctcaacagg
tctacagaagatgtgtttgatcctcgtcctgcacagtcttctccagtttgtcactgtttc
acagacctgctctgtcacatcagccctgccttcaagcaaaccttcaccacactcaaaaac
aggcctcagttaccaccagtagaggtgattccaactccataccacacactgagctggctc
gggcctccctgtgcctctcgtactcacaaaaataccttcagcagactgggagtggatgag
caggcagcaagacaggctccagactggaatgaggagttgcaagcagccagagatcttcca
caaggcacccgggaggagaggctgcagagagacagagctgtgatccaggtaaacagtgca
tttgtgagggctgtcatgcagggggcagagactgttgtagatggctttgtggagccagta
aatggaaatccagaggacccagctttcctgtggggtggcctgttcatgagccagggggca
gcgagcatggtgtttggcggagagaggggtcgcagggcaactcagaggctggagcttaaa
ggagtacaagcctacagcgaactagagggattggaggggcttcacacactacctacagcc
gttgtagactatagaggtgtgcgcctgtctgcccagggtttagcccctggcctggagggc
tcagagcaggaccaggaaactactcctgcatcaagaggcttgctgtatggggtaaatgca
ggaccccaagaatcccctcaacgcagacggctgctggcgctcttggctcacgccgccaaa
tctctttccctccagagacatgttgttgtggcacccaacgaccacaagataccactgttc
acctcagtggatgctcagggattgttgggggctgatgggaggttctacatactggatgtg
ttcaggacctttccagctgacgccaacttctgcccagaggcagagatggaaagtcagaca
gtcacaggagaagaggagaagaaagaaagctgtgaagacgaggagaagaaggattctgtg
aaagaaggctggccagagaattatcacatggactctgggcttccaaagagctttcctcac
agcctctgtagacttaggccagaactggtgcaggctttcatccagcacaaacattgccag
ttcactgagcgtgtcagggagaggttggatgacaatggaggctttgaagaatgtgcaaca
gcttgtgactctcgagccacagatgcagtacgagctgcttgtaaagacgtgggttcagtc
agtgacatcatctttgagatgcgctttaacccaaacatcttttctccaggagtgtccttc
cctcctggtgaaagtgcatcaacaaacctgcaggagaggttactgagggaagctgcagct
ttcatcatcacacaccagataccagcctttgtggaacattgcctacaaaatcacgaggca
ccgatggatggagcttctctaaaacaggcactacaccagcaaggcatcaacctccggtat
ctgggccatgtgatcaaggccatcaaccagtcagaacacaaggagcgcctgaggcatata
atgagattggtcataggtgaaattttcatccgctcaacaagaagagtgttcaacagtttc
ctccagggcgtggatgtgcctagtctctctgcagctgtcagtcacttcctctgctgccta
ttggttccccacttcacgcccactcctgtgggggaggagacgaaaaagaagtcaaggcgg
cgtggccgaggggccggggcctccgaaagcacgccctggagcacgctcacgggggctgag
ctgtggaacctggtctgccaggatgctgttgagacatacaacatctctgacagcctcggc
tctggtccgagccacctcgtggagcactacggccttcagaggctttctctgctcagagag
ttctgcctaaagaacggtgtacagttgaggctgagggactacatccttgacaaccaaaat
aaagctcccattggtccagatgacgtcctcaacatcttccctgttgtcaagcacgttcac
atgccaactgtggatgcttcaaaggcatttagcgctgcacagaactccatcaggaaaggt
ctgctggatcaggcctatgagcaactgacagaagcagcctacttgtttggtagggtgtgt
gacgacctgcagcctgaggcctgttactgccacagcctattggccagggtggccttcctg
cagggaaaggcagcagaggctcgcagtgtccagctgaaagcagtggtcatcagtgagagg
gtgcttggctttgaccatccaaacactatccagcaatataccctcttgggtgtgtatgtg
tatgctggaggggagaccgccttggctcagaagtgtctcctcagagctcgtctgctgatg
ctaacagtccatggagaagaccatccctacactgcaatactggataactgtcttgggttg
gtgctgactggagatcagacagagcagttcctaaagaatgccctaagacttaacacttcc
ttcttcggccccacagatttgcatactgctctcaatcagcacctattggcccagaggatg
tgcagtaagggtgactaccgaggtgctatgacccacgaaaaagaggccctcactgctttt
acttccttgtttggagaggatcacccacagtcacgctgcagcaaagagtttctgtgcgcc
atcacaaaacaagctgtgcaggtggagcgctctctcagacaggcaggagctgactgcacg
gagcaaacagtggagtgtctgacgcccacaactgataccattttggaacagatggttctg
gtgacaggaatcaggaggatcacacaaagtgacaggctccaggagtataagaagaaacac
ctggaacgaaaggcagcggcggccagagagctgggattcaatctaaattacgagcccatc
gcctcagaaactgtgaagggaggagagaaaagctcagaccaagaaacaggacgcgggaag
gaagctcaggaaggaggaagcccagcagtggagaataacagcgagagccaacaggaggaa
gatgtgtctgtggagagcgctgctgaaattccagctaacggtcatgtggtggagtcagct
gaccaggaccagcatgatgagaaaagagatgtagatggaggaaacagtgaagagagtgac
agagcagcttcagatgctgaggtgaagttagtgaatggggagtcagaggtcagggctgca
ggagaggaaacggagaccagtgtgcaaaatggagtagagggcagcacagccaacggggag
gtgaaatctgaagcaacatgcaatgagatgaaatcagatgagaaagatggtgagataaat
ggagcggtgaacgtcaccgccagcccgccagtcctgaagagtaaagggacctgggcagat
gttgttgtttcaaaagcggttatgaccaatggaacaggagacaaaggcacagcagtcaat
ggagtagcagaccgtgtcactgctaatggagcagctgaaaagtga
DBGET
integrated database retrieval system
