Lates calcarifer (barramundi perch): 108878584
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Entry
108878584 CDS
T04895
Name
(RefSeq) E3 ubiquitin-protein ligase CHFR
KO
K10644
E3 ubiquitin-protein ligase CHFR [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108878584
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108878584
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108878584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CRD
FHA
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
zf-C3HC4
zf-RING_6
zf-CCHH
zf-rbx1
YpsA
Motif
Other DBs
NCBI-GeneID:
108878584
NCBI-ProteinID:
XP_018524959
UniProt:
A0A4W6EQN4
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All DBs
Position
LG13:18306978..18320136
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AA seq
633 aa
AA seq
DB search
MDSCGRGRPWGKLVKVDSSETVLLFNRECTVGRKKGCYLSFPASKLVSGEHCKIVQDESS
GLVWLEDMSTNGTVINMSKLVKKQTHMLQNGDVIYFVYRKSEPEQNIAYVYHSIKTEQGN
SQHSYDTGRPSHSPAPLPASEMSLSVEPVLLTKAPRDPTQEEPQPSTSHFCIESPLTSGP
MATTASPASAKLKEDMDNMEPESKRRKKDKDYDSNLPHTSSTEVAGSAKGSPGSPLSKPP
VEGTKTDKMEESLTCVICQDLLHDCVSLQPCMHVFCAACYSGWMERSSLCPTCRCPVERI
RKNHILNNLVEAYLIQHPEKCRSEEDLKSMDSRNKITQDMLQPKVERSFSDEEGSSDYLF
ELSDNDSDSSDISQPLVMCRQCPGYRREVSQVLFATGSNYWFPGLLATPPIPAPPKPVTE
EGSAKPTGEQPSTSSDVPSAPQEYRCPPQGCHLICTCCLQPMPDRRAELNSQQDTAQQCV
LCQRPFCHMYWGCQRIGCQGCLARFSELNLTDKCLDGVLNNNNYESEILQSYLSSRGKTW
RDLLQEALQGLEQSHYCLTDCRISANTILCYCCGLRAFKELAFKYRQNIPPSELPAAVTS
RPDCYWGRNCRTQVKAHHAMKFNHICDQTRFKN
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggacagttgtgggagaggacgaccatgggggaagctagtcaaagtggactccagtgaa
actgtcctgctttttaacagggaatgcacagttggcagaaaaaaaggatgttatctgtca
tttccagccagcaaactggtctcaggggagcactgcaagatcgtgcaagatgaaagctca
gggctggtgtggcttgaagacatgagcactaatggcacagtaatcaacatgtccaaactg
gtcaagaagcagactcacatgctgcagaatggtgacgtcatctactttgtttataggaaa
agtgagccagaacaaaacatcgcttacgtgtaccactcaatcaaaacggagcaagggaat
tcacaacatagttatgacacagggagaccatcacacagtcctgctcctcttccagcttca
gagatgtcgctctctgtagaacctgtattgctcaccaaggctcctcgtgatccaactcag
gaggaacctcagccctccacctcccacttctgtattgagagccctctcacttctggtccc
atggcaacaacagcctctcctgcctctgccaaacttaaagaagacatggacaacatggag
ccagaaagcaagcggaggaaaaaagataaagattatgattcaaacttgccacacacctcc
agcacagaagtggctggttcagctaagggaagtcctgggagtcctttgtctaaacctcca
gtggaaggaactaaaacagacaagatggaggagtctctgacatgtgttatttgccaggac
ctactgcatgactgtgtcagcttgcagccttgcatgcatgtcttctgtgctgcctgctac
tcaggctggatggagcgttcttcgctttgccccacctgccgctgtcctgtggagaggatt
cgcaagaaccacatccttaacaacctggtggaggcttacctcatccagcatccagaaaag
tgtcgcagtgaggaggatctgaagagcatggacagccgtaacaagataactcaggacatg
ttgcagccaaaagttgaacgctctttctctgatgaggagggcagttcagattaccttttt
gagctctctgacaatgacagtgactcctcagacattagtcaacctttagtgatgtgcaga
cagtgtcctggctacaggagggaggtcagtcaggttctgtttgctacaggttcaaactac
tggttccctggtctgctagctacaccgcccatacctgctccacccaaaccagtaactgag
gaagggtctgcaaagccaacaggggagcagccttcaacatcctctgacgtcccctcagct
cctcaggagtaccgctgcccccctcagggctgccatctcatctgtacctgctgcctccag
ccgatgccagacagaagagctgagctaaacagccagcaggacactgctcaacaatgtgtg
ctgtgccagcgacccttctgtcatatgtactggggttgccagaggattggctgtcaaggc
tgtctggctcgattcagtgagctcaatctgacagacaaatgcctggatggagtgctaaac
aacaataactatgaatcagagatccttcagagctacttgtcttccagagggaagacatgg
agagatcttctccaggaggctctgcagggcttagagcaatcacactactgcctgacagat
tgccgtatttctgcaaacaccatcctgtgctattgctgcggcctgcgagcattcaaggag
ctggccttcaagtacagacagaacatccctccatctgaactgccagctgctgtaacgtct
cgtcctgactgttattggggacgcaactgtcgcacgcaggtgaaggctcatcatgcaatg
aaattcaatcacatatgtgaccagacacgtttcaagaactga
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