Lates calcarifer (barramundi perch): 108878639
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Entry
108878639 CDS
T04895
Symbol
smn1
Name
(RefSeq) survival motor neuron protein 1 isoform X1
KO
K13129
survival motor neuron protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108878639 (smn1)
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
108878639 (smn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMN_YG-box
SMN_Tudor
SMN_G2-BD
TUDOR
BUD22
Mn_catalase
Vma22_CCDC115
Motif
Other DBs
NCBI-GeneID:
108878639
NCBI-ProteinID:
XP_018525064
UniProt:
A0A4W6GAD7
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Position
LG13:complement(13734776..13739315)
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AA seq
284 aa
AA seq
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MANGCKEMLFTRGTGQSDDSDIWDDTALIKAYDKAVASFKTALKGEDEPQASKKNHPGKK
RKNNKKNQSRKRTNAPPDKEWQVGDSCCAYWSEDGQLYTATISSIDEKRGTCIVVYTGYG
NEEEQNLDDLLSEFSEGDEETNTKVNEAESSTEESDRSTTPNQHKQQPHSKGQKSKAHKE
PPPMWAPGFPGFPPGPPPMHAFRQQGGSRRSGGHAPVPPSWPPMMPFGPPMIPPPPPMSP
DMVDDEALGSVLISWYMSGYHTGYYLGLKQGRKEAANWTKLHHK
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatggatgcaaagagatgttgtttacccgcggaactggtcagagtgatgattca
gatatatgggatgacacagcactgataaaggcttatgacaaggcagtcgcatcattcaag
actgcccttaaaggtgaagatgagccacaagcctccaagaaaaatcacccaggaaaaaaa
cgcaaaaacaacaaaaagaaccagagcaggaaaagaaccaatgcaccaccagataaagag
tggcaggttggggactcatgctgtgcttactggtcagaggatggccagctctacaccgcc
acaatctcttccatagatgagaagaggggcacttgtatagttgtttacacaggctatggc
aatgaggaggagcagaacctcgacgacctgctttcagagttttctgagggtgatgaggaa
acaaataccaaggtaaatgaggcagaatcgtcaacagaggagagtgacaggtcaacaaca
ccaaaccaacacaaacagcagccgcatagtaaaggccagaagtccaaggcccacaaagaa
cctcctcctatgtgggctcctggcttccctgggtttcctccaggcccacctccaatgcat
gctttcagacagcaggggggaagcaggcgttctggtggtcatgcgcctgtacctccttcc
tggcctcccatgatgccttttggtccacctatgatccctccacctccaccaatgagcccc
gacatggtggatgatgaggccttgggcagtgtgctcatctcctggtacatgagcggatat
cacacaggatactacctgggtttgaaacaaggtcgcaaagaagctgcaaactggacaaaa
ctgcaccacaaatga
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