Lates calcarifer (barramundi perch): 108878735
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Entry
108878735 CDS
T04895
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03013
Nucleocytoplasmic transport
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108878735
09122 Translation
03013 Nucleocytoplasmic transport
108878735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108878735
03041 Spliceosome [BR:
lcf03041
]
108878735
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
108878735
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108878735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
108878735
NCBI-ProteinID:
XP_018525214
UniProt:
A0AAJ7LJP2
LinkDB
All DBs
Position
LG13:11128826..11136131
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AA seq
684 aa
AA seq
DB search
MSSDALKKRKSKVLRSEGGTPEMKRGRGDGDQQDARVYSEEVELDSRDPEQDYLQYKESC
ESLATLMSEIQELKANGAKEGCAEVEQRRMQSCIHFMNLKKLNRLAHMRLKRGRDQTHEA
KQRVDVLHLQLQNLLYEVMHLQKEISKCLEFKSKHEEIDLVSEEEFNQEAPQEISRPHLT
KNDPHQLTLARLDWELEQRKRLAEKYKESQATKEKIQKSIEVKKEHLRSLQPGLNAIMQA
SLPVQEYLSMPYEQTQKQTEIARHLPPPLYVLFVQANAYGQACDKNLCVSISGDVDEAKA
LSKPPEDSQDDESDSDAEEEQEKTKRRRPTTGGQLDDKRREMLKRHPLSLCLDLKCKDGS
ILHLFFYYLMNLNIMTVKTKVSTSTDLNTAISAGELLKADTLLSCLYTSDQGRETPNPAN
RYQFDKVGIISFADYVEELGHPYMWVQSLGGLHFPSDASEGVRVGSSLSASHMESTMKLL
RGRVQSRLALHKQFASLEHSIIPVSSECQHLFPAKIISRLARWTTITHQEYLELPYIRHV
TDAGLAKETDLYFMAVVERGTARLQAAVVLSPRYPEISPLFSLCLSWKGERSGRTDDNLR
AMESEVNVFKNELQGPRPGHQLLTNQIARLCVCLDVYLETEGQDDSVEGPREFPREKMCL
RTVRGPNRLKPFKYNHPQGFFSHR
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggacgccctcaagaaacgcaagtcgaaggttctccgcagtgaaggaggaacc
ccggagatgaagcgaggtcgcggagacggggaccagcaggatgcacgtgtgtacagtgag
gaggtggagctggacagcagggaccctgaacaggactatctacagtacaaagagtcatgt
gagagtttggccactctcatgagtgagatccaggagcttaaagccaacggagccaaggag
gggtgtgctgaggtcgagcagagacgtatgcagagctgcatccactttatgaatctgaaa
aaactcaatcgtctggctcatatgcggctgaagagaggcagagaccagacacacgaggca
aagcagagagtggatgtgctgcaccttcagttacaaaacctgctgtatgaagttatgcat
cttcagaaggagatcagcaagtgtttggagttcaagtctaaacatgaggagatagacttg
gtgtctgaggaagagtttaaccaggaggccccgcaggagatttccaggccccacctcacc
aaaaatgaccctcatcaactcacactggctcgactggactgggagcttgagcagagaaag
aggttggcagagaaatacaaggagtcacaggccacaaaggagaaaatccagaagagcatt
gaggtgaagaaggagcatctgagaagcttacagccaggactgaacgccatcatgcaggca
tctctcccggtgcaggagtacctgtccatgccttatgaacagactcagaaacagactgag
attgcccgccacctccctccacctctatatgtgttgtttgttcaagccaatgcctatggc
caggcctgtgacaagaacctgtgtgtgtcaatcagtggtgatgtggatgaggccaaagcc
ttgtccaaacctccagaagattctcaggatgatgagagtgactccgatgcagaggaagag
caagagaaaactaagaggagaaggccaactacaggtggccagctggatgacaagagacgg
gagatgctgaaaaggcaccctctgtccctctgcttagacctcaagtgtaaagatggcagc
atcctccatctcttcttctactacctgatgaatctgaacattatgacggtcaagaccaag
gtctccacctccacagacctaaacacagccatcagtgcaggggagctgctcaaagcagac
actctactcagctgtctctacaccagcgaccagggacgggaaacacccaatccagcaaat
cgctaccagtttgataaagtcggaatcatttcctttgctgattatgtggaggagctggga
catccttacatgtgggttcagagtctcggaggactacattttcctagtgatgcttcagag
ggtgtccgtgtgggcagttctctgagtgccagccacatggagagcaccatgaagctgctg
aggggacgagttcagtctcgcttggctttgcacaaacagtttgcctctttagagcacagc
attatcccggtctccagtgagtgtcagcacctctttcctgccaagatcatctcccgttta
gcccgctggaccactatcacccaccaggagtacctggagctgccatatatacgtcatgtg
actgatgcagggctggcaaaggagactgatctgtactttatggcagtggtggaaagaggc
acagctcgtctccaggccgcagtggtgctgagcccccgttacccagagatctctcctctt
ttctccctctgtctcagctggaagggagagcgcagcggacgcactgacgacaaccttcga
gccatggagagtgaggtcaatgtgttcaaaaatgaactacagggaccacgtccaggacac
cagctcctgaccaatcagattgcgcgcctgtgtgtctgcctggatgtgtatttggagact
gaaggacaagatgacagcgtggagggaccacgggagttcccccgcgaaaagatgtgcttg
cgtactgtcaggggtccaaatcgtctgaaaccattcaagtacaaccatcctcagggcttc
ttcagtcatcgctaa
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