Lates calcarifer (barramundi perch): 108878859
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Entry
108878859 CDS
T04895
Name
(RefSeq) cytoplasmic FMR1-interacting protein 1 homolog
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04810
Regulation of actin cytoskeleton
lcf05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
108878859
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
108878859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108878859
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108878859
Factors involved in mRNA localization
Other mRNA localization factors
108878859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
Cypovirus_WIV_4
Spore_SspJ
Motif
Other DBs
NCBI-GeneID:
108878859
NCBI-ProteinID:
XP_018525364
UniProt:
A0A4W6DYF1
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All DBs
Position
LG17:complement(5135886..5164377)
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AA seq
1253 aa
AA seq
DB search
MTSTVTLEDALSNVDLLEELPLPDQQPCIEPLPSSVMYQPNFNTNFEDRNAFVTGIARYI
EQATVHSSMNEMLEEGQEYAIMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVT
KLMNFMYFQRTAIDRFCGEVRRLCHTERRKDFVSEAYLLTLGKFINMFAVLDELKNMKCS
VKNDHSAYKRAAQFLRKMSEPSSIQESQNLSMFLANHNKITQSLQQQLEVINGYEELLAD
IVNLCVDYYENKMYLTPSEKHMLLKVMGFGLYLMDGNSSNIYKLDAKKRINLTKIDKFFK
QLQVVPLFGDMQIELSRYIKTSAHFEENKSRWTCTSISSSPQYNICEQMIQIREDHMRFI
SELARYSNSEVVTGSGRQEAQKTDSEYRKLFDLALQGMQLLSQWSAHVMEVYSWKLVHPT
DKYSNKECPDNAEEYERATRYNYTSEEKFALVEVIAMIKGLQVLMGRMESVFNHAIRHTI
YSALQDFAQVTLRDPLRQAIKKKKNVVQSVLQAIRKTVCDWETGREPHNDPALRGEKDPK
GGFDIKVPRRAVGPSTTQLYMVRTMLESLIADKSGSKKTLRSSLEGPTILDIEKFHRESF
FYTHLLNFSETLQQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEASM
MEYVLYPLDLYNDSAHYALTKFKKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKILAGS
LLLDKRLRTDCKNQGANIPWPASNRYETLLKQRHVQLLGRSIDLNRLITQRVSAALAKSL
ELAINRFESEDLTSIMELEGLLEINRMTHKLLSKFLTLDSLDAMFREANHNVSAPYGRIT
LHVFWELNYDFLPNYCYNGSTNRFVRTILPFSQEFQRDKPPNAQPQYLYGSKTLNLAYSS
IFSSYRNFLGPPHIKVMCRLLGYQGIAVVMEELLKVVKSLLQGTIMQYVKTLMEVMPKIC
RLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCFQNLREVGNALLFCLLSEQSLSQEEVC
DLLHAAPFQNILPRVHVKEGERLDAKMKRLEAKYTALHMVPLIERLGTPQQIAIAREGDL
LTKERLCCGLSMFEVILTRVRGFLDDPIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCI
PVGAHEFTVEQCFGDGLHWAGCMIIALLGQQRRFDILDFSYHLLKVQKHDGKDEIIKSVP
LKKMVDRIRKFQVLNNEIFAILNKYLKSGDGENMPVEHVRCFQPPIHQSLASS
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atgacatccaccgtgactttagaggatgctctctccaacgtggacctgttggaggagctg
ccgctcccagaccagcagccatgcattgaacccctcccctcctcagtcatgtatcagccc
aacttcaacaccaactttgaggaccgaaatgcctttgtgaccggcatcgccagatacatt
gagcaagccactgtccactccagcatgaatgagatgttggaggaggggcaggagtatgcc
atcatgctctacacctggaggagctgctcacgtgcaataccacaggtcaaatgcaacgaa
cagccaaacagagtggagatctatgagaagacagtggaggtcctggagcctgaggtcacc
aagctgatgaatttcatgtacttccagcgcacagcaatcgaccgtttctgtggggaggtc
cgtcgtctctgtcacacagagcgcagaaaggactttgtctctgaggcttacctcctgacc
ctcggaaagttcatcaacatgttcgctgtgctggacgaactgaagaacatgaaatgcagc
gtcaagaacgaccactccgcctacaaacgagctgcccagttcctcagaaagatgtccgag
ccctcatccattcaggagtctcagaatttgtccatgttcctggcaaaccacaacaaaatc
actcagtctttacagcagcagttggaggtgattaatggatatgaggagctgctggcagac
attgtcaacctgtgtgttgattactatgagaacaagatgtacctcactcccagtgagaaa
cacatgttgctcaaagtaatgggttttggcttgtacctcatggatggaaacagcagcaac
atctacaaactagatgccaaaaagagaattaacctcaccaagattgacaagtttttcaag
caactccaggtggtccctttgtttggcgacatgcagattgagttgtcccggtacatcaag
accagtgctcactttgaagagaacaaatccaggtggacttgcacatctatatccagcagt
ccccagtacaacatctgtgagcagatgattcagatccgcgaggaccacatgcgcttcatc
tcggagctcgctcggtatagcaacagtgaggtggtgaccggatcagggcgtcaggaagcc
caaaagacggattcagagtacaggaagctgtttgacttggccctgcagggcatgcagctg
ctctcccagtggagtgctcatgtcatggaagtgtactcctggaaactggttcatccaaca
gacaagtactccaacaaggagtgtcctgacaatgctgaggagtacgagagagccaccaga
tacaactacacaagcgaggagaagtttgccctcgtagaggtgatcgctatgataaaggga
ctgcaggtgttgatgggacgcatggagagtgtgttcaatcacgccatccgtcacaccatc
tactcagctctgcaggactttgctcaagtcactctgcgtgacccactgcggcaggccatc
aagaagaagaaaaatgtcgtccagagtgtcctccaggctatccggaagacggtctgcgac
tgggaaactggccgggaacctcacaacgatcctgccctccgtggagaaaaagaccctaag
ggtggctttgacattaaggttcctcgtcgtgctgtggggccctccactacacagctctac
atggtgaggaccatgctagagtctctcattgctgacaaaagtggctctaagaagactctg
cgtagcagtctggaaggcccaaccatcctggacattgagaagtttcaccgcgagtccttt
ttttatacccatctgctgaattttagtgagactttgcagcagtgttgtgacctctcccag
ctgtggttcagggagttcttcctggagctcactatgggtcgcaggatccagttcccaatt
gagatgtccatgccctggatcctcaccgaccacatcctggagaccaaggaagcttccatg
atggagtatgtgctgtatcccctggatttgtacaacgacagtgcacactatgccctgacc
aaattcaagaagcagttcctctacgatgaaatagaggctgaggtgaacctgtgctttgat
cagtttgtctacaagctggctgatcagatatttgcctactacaagattctagcaggaagt
cttctgctcgacaaacgtctgagaactgactgcaagaaccaaggggccaatattccctgg
cctgcctccaaccgctacgagactctgctcaagcaacgccacgtccagctcctaggccgc
tccattgatctgaacaggctcatcactcagagagtttcagctgcccttgcaaagtctcta
gagctggccatcaatcgctttgagagtgaggacctcacctcaattatggaactggaaggt
ctgctggagatcaaccgtatgacgcacaagctccttagtaagtttttgactctggacagc
ttggacgccatgttccgcgaggccaaccacaacgtgtcggctccctacggccggataaca
ctgcacgtcttctgggagctaaactatgacttcttgcctaactattgctacaatggatct
accaacaggtttgtgcgcaccatcctgcctttctctcaggagttccagagggacaagcca
cccaacgctcagccccagtatctgtacggatcaaagaccttgaacctggcatatagcagc
atattcagctcctataggaacttcctgggtcccccgcacatcaaggtcatgtgtagactg
ctgggctaccagggcatcgctgtcgtgatggaggaactgctgaaggttgtcaaaagcctg
ctccagggcaccataatgcagtatgtgaagaccctgatggaagtgatgcccaagatctgt
cggcttccccgacacgagtatggctccccaggtatcctggaattctttcaccaccagctg
aaggacatcgttgaatatgctgagctcaagacggtgtgtttccagaacctgagggaggtg
ggcaacgccctcctgttctgtctgctgagcgagcagagtctgtcgcaagaagaagtttgt
gatttgctgcatgctgcacctttccaaaacattctccccagagtccatgtcaaagagggg
gaacgcctggatgccaagatgaagcgcttggaagccaagtacacagcactgcatatggtt
ccactgatcgagcgccttggtacaccacagcaaatagccatcgctcgcgagggcgacctc
ctgaccaaagagaggctgtgttgcggtctgtccatgtttgaggtcatcctcacacgtgta
cgaggcttcctggatgaccccatctggcgcggaccgctgcccagcaacggcgtgatgcac
gtggacgagtgtgtggagttccaccgtctctggagtgctatgcagtttgtgtactgcatc
cctgtgggagcccatgagttcacagtggagcagtgcttcggagacggactgcactgggcg
ggctgcatgatcatcgccctgctgggacagcagagacgctttgacatcctcgacttcagc
taccaccttctcaaggtgcagaaacacgacggcaaggatgagatcatcaagagtgtgcca
ctgaagaaaatggtggacagaatccgcaaattccaagtcctcaacaatgagatatttgcc
atcctgaacaagtacctgaagtctggagatggagagaacatgccggtcgaacacgtccga
tgcttccaaccaccaatacaccagtcacttgccagcagctga
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