KEGG   Lates calcarifer (barramundi perch): 108878872
Entry
108878872         CDS       T04895                                 
Symbol
smx5
Name
(RefSeq) smx5
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03018  RNA degradation
lcf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108878872 (smx5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108878872 (smx5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcf03019]
    108878872 (smx5)
   03041 Spliceosome [BR:lcf03041]
    108878872 (smx5)
Messenger RNA biogenesis [BR:lcf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108878872 (smx5)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     108878872 (smx5)
Spliceosome [BR:lcf03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    108878872 (smx5)
 Complex C
  U2 snRNP components
    108878872 (smx5)
SSDB
Motif
Pfam: LSM SM-ATX DYW_deaminase
Other DBs
NCBI-GeneID: 108878872
NCBI-ProteinID: XP_018525379
UniProt: A0A4W6DKR3
LinkDB
Position
LG17:4433776..4436288
AA seq 95 aa
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEAMQQKQ
NT seq 288 nt   +upstreamnt  +downstreamnt
atgcttttctactcgtttttcaagtctctggtgggcaaggacgtagtggtggagctcaaa
aacgacctgagcatctgtggaacacttcattcagttgaccagtacctgaacattaagctc
acagacatcagtgtcacagatccagagaaatatccacatatgctgtctgtgaaaaactgt
ttcatccgtggatctgtggtccggtacgttcagctacctgcagatgaagtggacactcag
ttactgcaagacgctgcacgaaaagaggcaatgcagcagaagcaatga

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