Lates calcarifer (barramundi perch): 108878931
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Entry
108878931 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: gamma-aminobutyric acid receptor subunit alpha-5
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04080
Neuroactive ligand-receptor interaction
lcf04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
108878931
04082 Neuroactive ligand signaling
108878931
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108878931
Ion channels [BR:
lcf04040
]
Ligand-gated channels
GABA-A
108878931
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
CytochromB561_N
DUF7205
Motif
Other DBs
NCBI-GeneID:
108878931
NCBI-ProteinID:
XP_050933262
UniProt:
A0AAJ8BIT1
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Position
LG17:4936974..4959698
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AA seq
459 aa
AA seq
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MGDGMCYSFAMRRLWVCVLLVSITCRLSLSQDVTGTPKEAELNDNITIFTRILDGLLDGY
DNRLRPGLGEKVTEIKTNIFVTSFGPVSDTEMEYTIDVFFRQSWKDERLCFKGPMEMLAL
NNLLASNIWTPDTFFLNGKKSIAHNMTTPNKLLRLKDDGTLLYTMRLTISAECPMQLEDF
PMDAHACPLKFGSYAYPVSEVVYTWTQGAAKSVVVAEEGSRLNQYHLIGQTAGTEDIYTS
RGQYTVMMAHFYLKRKIGYFVIQTYMPCFMTVILSQVSFWLNRESVPARTVFGVTTVLTM
TTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRSWAWDGKKAMEAQ
QPKKKDPLALSKKPNNTCSAGVNYTANLTKDTSISTISNSTAVQLKPSETKAPDPKKTYN
SVSKIDKMSRIVFPVLFGTFNLVYWATYLNREPVIKGAV
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgggcgatggaatgtgctacagctttgcaatgagacgtctgtgggtctgtgtcttgctt
gtgagcatcacctgccgtcttagcctctcgcaggatgtaactggaactcctaaagaggca
gaattaaatgacaacatcaccatcttcacacgcatcctggacggactgctggatggttat
gacaacagactccgccctggactgggagaaaaggtgacagagatcaaaaccaacatcttt
gtcacaagttttggtccagtgtctgacactgaaatggaatacactattgacgtgttcttt
cgccagagctggaaagatgagagactttgcttcaaaggcccgatggagatgcttgccctg
aataatctccttgccagtaacatctggacccccgacaccttcttcctcaacgggaagaaa
tccatcgctcataacatgactacacctaacaaactactgcggctcaaagatgacgggact
cttctctataccatgagactgactatatcagcagaatgccccatgcaactggaggatttc
ccgatggacgcccatgcttgtccccttaaatttggaagctatgcgtatccagtctcagag
gtggtctacacgtggactcagggagcagccaagtcagtggtggtggcagaggagggctcc
cggctcaatcagtatcatctgattggtcagactgcaggcacagaggacatctacaccagc
cgaggtcaatatactgtgatgatggctcacttttacctgaagaggaagatcggctacttt
gtcattcagacctacatgccttgcttcatgactgtaatcctgtcgcaggtttccttttgg
ctcaaccgggagtctgtgccagcgcggactgtctttggtgtgaccacagtgctcactatg
acaactctcagcatcagtgctcgaaactcgctgcctaaagtggcttatgctactgctatg
gactggttcatcgcagtctgctacgcctttgtcttctctgccctcattgaatttgctaca
gtcaactatttcaccaagaggagctgggcctgggatggaaaaaaagcgatggaggcccaa
caacccaagaaaaaagaccctttggctctatctaaaaagccaaacaacacctgttcagct
ggtgtgaattatacagccaaccttacaaaggacacatctatctccaccatttcgaatagc
acagctgttcagctcaaaccctctgaaaccaaggccccagaccccaaaaagacttacaac
agcgtgagcaagattgacaagatgtccaggatagtgttcccagtgctgtttgggaccttc
aacctggtgtactgggccacatatctcaatagggaaccagtgatcaaaggagctgtgtaa
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