KEGG   Lates calcarifer (barramundi perch): 108878936
Entry
108878936         CDS       T04895                                 
Name
(RefSeq) E3 ubiquitin-protein ligase SH3RF1 isoform X1
  KO
K12171  E3 ubiquitin-protein ligase SH3RF [EC:2.3.2.27]
Organism
lcf  Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:lcf01009]
    108878936
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lcf04121]
    108878936
Enzymes [BR:lcf01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     108878936
Protein phosphatases and associated proteins [BR:lcf01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     108878936
Ubiquitin system [BR:lcf04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    108878936
SSDB
Motif
Pfam: SH3_9 SH3_1 SH3_2 zf-RING_UBOX zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_5 zf-C3HC4_3 zf-C3HC4_4 zf-RING_4 zf-RING_11 zf-Nse Prok-RING_4 zf-rbx1
Other DBs
NCBI-GeneID: 108878936
NCBI-ProteinID: XP_018525503
UniProt: A0A4W6E3L5
LinkDB
Position
LG17:5817448..5849336
AA seq 866 aa
MDESVLLDLLECPVCLERLDASAKVLPCQHTFCRRCLQGILGSRGELRCPECRTLVECAV
DELPSNILLVRLLDGIKQRPRRAGPGAGVCTNGTSGAVARAHSSGTRDQVTPGAQPQRAQ
AKSTLVRGVPQLPCAKALYNYDGKEPGDLKFSKGDIIILRRQVDENWYHGEMGGVHGFFP
TNFVQVIKPLPQPPPQCKALYDFELKDKEADKDCLPFSKDDILTVIRRVDENWAEGMLGD
KIGIFPISYVEFNSAARQLIELDKPSDSSGDSGEGASSGPQSNGAQRAGEKKNSKKRHSF
TSLTMSHKPMLAPPPQRHSMEISGPVLISSSNPTAAARIGEISGGLSCSAPSQVHICTTG
LIVTPPPSSPVTTATVFTFPSETSYTSIPVDALPPPPPPPPQSSAGGAAYSLAAGQRPSP
SISDQSGRQRPTVYVAMFPYTPRKEDELELRKGEMFLVLERCQDGWFKGTSMHTGKIGVF
PGNYMSPVSRTASGSTQPKVPMSLCTQAGRGVTIVSPSSAPLGGIVPGPDFNKPLTVCSS
AVSASSQPAAVVTAAQTATGQQPKVPLHVSSQMTVNQARNAVRTAACHSQDRPTAAVTPI
QSSTPVTYLPHLAVCPQPSSSTAQGCTRVGVAMGCAAASLTPPNVSAASLEGDALRPVSV
LTVPVGPGNSSALNPTNNAALACRLDKDVKREKKSLLKLLSSNKKKSRPSPPSSPTLEAE
QTAAGEVLHGAVGHDTSPPSGSVSCLEPEPAAAAAAAAAVASASSSSSVPDSSHRKSSPL
DGCAPIAPPPRQPCSSLLSQQHDARPIICERYRVVVSYPPQSEAELELKEGDIVFVHRKR
EDGWFKGTLQRNGRTGLFPGSFVDSI
NT seq 2601 nt   +upstreamnt  +downstreamnt
atggacgagtcagtattgttggatttgcttgagtgccctgtttgtctggagcggttggat
gcttcggcaaaggttcttccatgtcagcacaccttctgccgccggtgcctccaaggcatc
ctaggctcacgtggagagctgcgctgcccagagtgccggacgttggtggagtgtgccgtg
gatgaactccccagcaacatcctccttgtgcgcctcttggatggcatcaagcagaggcct
cgaagggctggccctggggctggagtctgcacaaatgggacgtctggagccgtggccagg
gcacacagcagtggaaccagggaccaggtcaccccaggagcacaaccccagcgagctcag
gcaaagagcacccttgtccggggtgtaccccagcttccttgtgccaaggcactctacaac
tatgatggcaaggaaccaggagacctcaagttcagcaagggtgacattatcatcctgcgc
cggcaagtggatgagaactggtaccacggggagatgggtggagtccatggcttcttcccc
accaactttgtccaggtcatcaagccgctgccacagccaccacctcagtgcaaagctctc
tatgactttgagctcaaagacaaggaggcggacaaggactgtctgcccttctccaaggat
gatatcctgactgtgatccgcagagtggatgaaaattgggcagagggaatgctgggagat
aaaattggaattttccccatctcatacgttgagttcaactctgcagctcgtcagcttata
gagttggacaagccgtcagactccagtggagactccggtgagggggcctcctcagggccc
cagagcaacggtgcccagcgggcaggggagaagaagaacagcaagaagcgacattccttc
acctctctcactatgtcccacaaaccaatgctagcccctccccctcagcgccactccatg
gagattagcgggccagtcctcatcagctccagcaaccccacagcagctgcccgtatcgga
gagatcagtggggggctttcctgcagcgcaccttcacaggtacacatttgcacaactgga
ctaatcgtgaccccaccccctagtagtccggttactacagcaactgtcttcacatttccc
tcagagacaagctacacatccatccctgtggatgctctcccaccacccccacctcctccc
ccgcaatcctctgccggcggagcggcatattcattggctgccggacagagaccctccccc
agcataagtgaccaaagtgggagacaaagacccacagtctatgtggcaatgttcccctat
actcctcgcaaggaggatgagctggagctgaggaagggagagatgttcctggtgctggaa
cgctgtcaggatggctggttcaagggcacgtcaatgcacactggcaaaattggagtcttc
cctggcaactacatgagtccagtcagcaggacagcgtcagggagcactcagcctaaagtg
cccatgagtctgtgtactcaggctggcagaggagtcaccatcgtcagcccttcttctgcg
cccctcgggggcattgttccagggcctgacttcaacaaacccctcaccgtgtgctccagc
gctgtatccgccagctctcagcctgcagctgtggtaacagcagctcagacagccacagga
caacagccaaaagtcccattgcacgtcagctcccaaatgactgtgaatcaggctcgcaac
gcggtcaggacagctgcatgtcacagtcaggaccggcccacagcagcagtgacacccatc
cagtcttcaacacctgtaacctatcttccacaccttgcagtgtgcccacagccctcctct
agcactgcccagggttgtacccgggtcggggtggcaatgggctgcgctgctgcctctctg
accccacccaatgtcagtgctgcatcattggagggtgatgctttgagacctgtatctgtc
ctcactgtgcctgttggccctgggaacagctctgctcttaatccaacaaacaacgcagcc
ctcgcctgcagactggacaaggacgtcaagagagaaaagaaaagtcttctgaagctgctg
tcctccaataagaagaagtctcgtccttcacccccctcctctcctacccttgaggcggaa
cagactgcagctggagaggtgctacatggcgccgtggggcatgacacctcccctccctcc
ggctctgtcagctgcctcgagcctgaacctgctgctgctgctgccgctgctgctgccgtt
gcttctgcctcttcatcctcctcagtcccagactcctcccatcggaagagcagtcccctt
gatggatgtgctcccatcgctcctccccctcgccagccgtgctcctctcttttatctcaa
cagcatgatgcacggcccatcatatgtgagaggtaccgggtggtggtatcatatcctccc
cagagcgaggctgagctggaacttaaggagggcgacattgtgtttgttcacaggaagagg
gaggacggctggttcaaaggcacactgcaaaggaacggcaggactggcctgttccctggc
agctttgtagacagcatctaa

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