Lates calcarifer (barramundi perch): 108878960
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Entry
108878960 CDS
T04895
Name
(RefSeq) synaptic functional regulator FMR1
KO
K15516
fragile X mental retardation protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108878960
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108878960
Factors involved in mRNA localization
Other mRNA localization factors
108878960
mRNA cycle factors
Stress granule specific factors
108878960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
KH_9
Tudor_FRX1
FXMR_C2
KH_1
Agenet
Motif
Other DBs
NCBI-GeneID:
108878960
NCBI-ProteinID:
XP_018525561
UniProt:
A0A4W6FUQ2
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All DBs
Position
LG8:4120612..4135123
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AA seq
602 aa
AA seq
DB search
MDELVVEVRGTSGAFYKAFVKDVHEGSVTVAFENNWQPERQIPFQDVRFPPPTGFCKEIN
ESDEVEVYSRANDKEPCGWWLAKVRMVKGEFYVIEYAACDATLNEIVTLERLRPVNPNKP
ATKSTFIKIRLDVPEDLRQMCSKESAHKDFKKAVGAFSVTYDSEKKQLVILSVNEVTTKR
ATMMSDMHFRSLRTKLSLMMRNEEASRQLESSRQLASRFHEQFAVRDDLMGLAIGTHGAN
IQQARKVPGVTNIDLDEETCTFHIYGEDQDAVRMARSFLEFSEDVIKVPRNLVGKVIGKN
GKLIQEVVDKSGVVRVRIEPENDKKPSPAAAAADEGMVPFVFVGTKESISNATVLLDYHL
NYLKEVDQLRLERLQIDEQLRQIGGGSGGGGTGPRNPKDKTYVFDNGMGLGMGRGGSGGG
KPYTGGGGRGGRGRRGGGAAFASGTNSEASNASETESDHREELSDWSLAPTEELMTGGGT
LPRRTDGRKRAGGGGPRGRGGRGRGGGYKGEDMQWSEPRPRHVRDPKTRGQEDTLQIRVD
GNNERSVQHSSGGRGGGGPSPSQGGVGASGEGPSRHHHQRPIRDRGMKKDKQDAPPLVNG
VS
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggatgaactagtcgtggaagtgaggggaacaagtggggccttttacaaggcttttgtg
aaggatgttcacgaaggatcagtcactgtggcatttgaaaacaactggcagccggagcgc
cagatcccatttcaggatgtgcgatttcctcctccaacagggttctgcaaggagataaat
gagagcgatgaggtcgaggtatattccagggctaatgacaaggagccatgtggatggtgg
ctggccaaggttcgcatggtcaaaggagagttctatgtaatagagtacgctgcatgtgac
gctacattaaatgagatagtgacactggagaggttacggccagtcaaccccaataaacca
gccacaaaaagcaccttcatcaagatcagactggatgtacccgaagatctacggcagatg
tgctccaaggaatcagcacacaaagactttaagaaggctgtgggagcgttcagtgtcacc
tatgactcagagaaaaagcagctggtcatcttgtcagtgaatgaggtaacaacgaagcgg
gccactatgatgagtgacatgcacttcaggagcctccgcaccaaactgtctctcatgatg
aggaatgaagaggccagcagacaactggagagttccagacagcttgcatcacgatttcat
gaacagtttgcagttcgggatgatttaatgggtctggccatcgggactcacggggccaac
atccagcaagctcgtaaagtccctggagtaactaatatagacctggatgaagagacatgt
acctttcacatatacggagaggatcaggatgcggtccgtatggcccggagtttcctagag
ttctctgaagatgtcatcaaagttccccggaacttagtagggaaggtgattggcaagaac
ggcaaactgatccaggaagtggtggataagtctggtgtggtgcgggttcgtatcgagcct
gaaaacgacaaaaagccctcaccagcagcggcagcagcagacgagggaatggtgccattt
gtatttgtggggaccaaggaaagcatctctaatgctacagtcctgctggactaccatctc
aactaccttaaggaggtggatcagcttcgtctggagcgtcttcagatcgatgagcagttg
agacagataggagggggaagcggaggaggagggacagggcctcgaaaccctaaagacaaa
acctacgtgtttgataatggcatggggctggggatggggagaggaggcagtggaggaggg
aagccctacacaggagggggaggaagaggtggacgagggcgaagaggaggaggtgcagct
tttgcctcgggcaccaactcagaggcatccaatgcttcagagactgagtcagaccacaga
gaggagctcagtgattggtcgctggcccccaccgaggagctgatgacaggaggcggaacc
ctgcccagacggacagatgggaggaagagagcaggcggcggaggaccgaggggacgaggg
gggagaggaagaggaggagggtataaaggtgaagacatgcagtggagcgagccaagacct
cgtcatgtcagagaccccaagacaagagggcaggaagacaccctacagatccgtgtggac
ggtaacaatgagcgaagtgtgcaacactcatcaggggggcgaggaggaggggggccttcc
ccctcccagggtggcgtcggtgcgagcggcgagggcccatcccgccatcatcatcagaga
cccatcagagaccgaggaatgaagaaggacaaacaggacgctcctccgctggtgaacgga
gtgtcgtag
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