Lates calcarifer (barramundi perch): 108878972
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Entry
108878972 CDS
T04895
Name
(RefSeq) cysteine protease ATG4B
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04136
Autophagy - other
lcf04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
108878972
04136 Autophagy - other
108878972
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lcf01002
]
108878972
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108878972
03029 Mitochondrial biogenesis [BR:
lcf03029
]
108878972
Peptidases and inhibitors [BR:
lcf01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
108878972
Membrane trafficking [BR:
lcf04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
108878972
Mitochondrial biogenesis [BR:
lcf03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
108878972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
108878972
NCBI-ProteinID:
XP_018525583
UniProt:
A0AAJ7LK72
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Position
LG17:4067627..4075117
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AA seq
394 aa
AA seq
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MDAATLTYDTLRFGEFEDFPETSEPVWILGKEYNALTEKDEILSDVTSRLWFTYRKNFPP
IGGTGPTSDTGWGCMLRCGQMILGEALMCRHLGRDWRWARGQKQREEYISILNAFIDKKD
SYYSIHQIAQMGVGEGKPIGQWYGPNTVAQVLKKLAVFDTWSRLVVHVAMDNTVVIEEIK
RLCMPWLDVAGACGEAEGVGELNGCLEGACALAEEETALWKPLVLLIPLRLGLSDINEAY
IETLKQCFMLPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPCEDSQVPDETY
HCQHPPCRMHICELDPSIAAGFFCRTEDEFDDWCMRIRRLSCKRGGLPMFELVDSQPSHM
VSVDALNLTPDFSDSDRLERFFDSEDEEFEILSL
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagctaccttaacatacgacacacttcgctttggagagtttgaagattttcct
gagacctcagagcctgtgtggatcttagggaaagaatacaatgcactcacagagaaagat
gagattttatcagatgtcacttcacgactgtggttcacatacagaaaaaacttcccaccg
attggtgggacaggaccaacatcagatacaggatgggggtgtatgttacgatgtggccag
atgatcctcggtgaggccctgatgtgtagacatttaggcagagactggagatgggccaga
ggtcagaaacaaagagaagaatacatcagtattctcaatgccttcattgacaaaaaagac
agctattattccatccatcaaattgctcaaatgggagtaggagagggaaagcccataggc
cagtggtatggaccaaacacagttgcccaggttctaaagaaactggcagtgtttgacaca
tggagcagattagttgtacatgtggcgatggacaacactgtggtcatcgaagagatcaag
cgcctctgtatgccgtggctggacgttgcaggagcttgtggagaagcagagggagtgggg
gagctcaatggttgccttgagggagcgtgtgccctggctgaggaggagacagctctctgg
aaacctctcgtactgctcatccccctcaggctgggcctgagtgatataaatgaggcctac
attgaaacgctcaagcaatgcttcatgctgcctcagtccctgggtgttattgggggaaaa
cccaacagtgcccattacttcattggttatgtcggagaggagctgatctatttagaccca
cacaccacacagcctgcagtggagccatgcgaagacagccaggtccccgatgagacatac
cattgtcagcacccaccctgtcgcatgcacatctgtgaactggatccatccattgctgcg
ggtttcttctgcagaacagaggacgagtttgatgactggtgtatgcgcataagaaggctg
tcctgcaaaagagggggcttgcccatgtttgaattagtagacagtcagccctctcacatg
gtcagcgtggatgcccttaatcttactcctgacttctcagactcagaccggttggagcgg
ttctttgattcagaagacgaagagtttgagatcctttccctgtga
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