Lates calcarifer (barramundi perch): 108879017
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Entry
108879017 CDS
T04895
Symbol
si:ch73-63e15.2
Name
(RefSeq) protein strawberry notch homolog 2 isoform X1
KO
K26273
protein strawberry notch
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108879017 (si:ch73-63e15.2)
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
108879017 (si:ch73-63e15.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
ResIII
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
108879017
NCBI-ProteinID:
XP_018525637
UniProt:
A0AAJ7PIC6
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All DBs
Position
LG17:complement(8086623..8147887)
Genome browser
AA seq
1615 aa
AA seq
DB search
MPTLPSALAMDGENYLHPEGPQLDSSLFSVAPSNMESSIYASSGSWGSFSQQAGYSIHCP
MQSGNQQYHLNSSTTTTTPDVHMDMYSGFPDVDFSLNLPRNGDFPQDLSCIDDLSTNSLF
SSPADSLSEYADTQSFISTDNLDTVPTLWDVNTSTTTPAQSLEQNGTSRFQGLASLDDIT
AIISTPPLGGFQPQRNQPPPEEEEDAEEEETEELGHVDTYAEYKPSKSTIGISHPDIVVE
TNTLSSVPPPDITYTLSIPESTINSGLLSALQLEAIIYACQQHEVILQNNQRAGFLIGDG
AGVGKGRTVAGIILENYLKGRKKALWFSISNDLKFDAERDLKDIDAPNIPVHALNKIKYG
DTATSEGVLFATYSALIGESQAGGQRRTRIKQILDWCKPDFDGVIIFDECHKAKNATSTK
MGKAVLDLQNKLPRARVVYASATGASEPKNMIYMSRLGIWGEGTPFRVFDDFLHAIEKRG
VGAMEIVAMDMKVSGMYIARQLSFSGVSFRIEEIGLDSDFKLVYNKAAKLWAEALQVFMR
AADELGLVSRKSLWGQFWSSHQRFFKYLCIAAKVRCLVELAQKELEAGKCIVIGLQSTGE
SRTREVLDENDGHLDRFVSAAEGVFQSLVTKHFPSEKQRREKAPGNKRKRKPRGRQPKVP
KHTVDSGGVINITDDSSSDSDGMDTDSNSSPDSLLDNDDVIFVNQTSYQTARIEEMKQGL
LNKISELGKELPLNTLDELIDKFGGPDKVSEMTGRKGRVVRRPDGSVRYESRAEQGLTID
HINIKEKDRFMSGEKLVAIISEAASSGISLQADKRVKNQRRRVHMTLELPWSADRAIQQF
GRTHRSNQVTAPEYIFLISELAGERRFASIVAKRLESLGALTHGDRRATESRDLSKYNFE
NKYGTKALDKITKAILGHIENKVPPPKGYPAGEAMFFRDMKLGMMDVGIFCKEPRFGIST
EKDCSITKFLNRILGLEVHKQNYLFQYFTDNFDYLIEKDKKEGKYDMGILDLAPGNDEIY
EEKQETFLTAGNPQDGQVVLYKISVDRGMPWDEAYNRSLQLTGPDEGFYLSQKLRGNHPC
VLLAEQGRGKNFIVFKPNIGKQTHPESLDNLHQRYRKVTPEEARDSWENQFTFSFKKCSH
ANWNGKCKKIEEGQECLQGMRLRQYHMLCGALLRVWKRVSDVVSDITSSSILQIVRLRTK
QHNKQVGIKIPENCVARVREELLLMDEEVKRRRKEKEQQAVEQRLAEERLRKMEQDNKHL
LANLFNQKPMLTQSLAQSLAQKLNQNPLQRTQLQRIQGQTQATLRPPPQNLTLMSLQRNP
NQPQQRTHNSWPNNSTTTSTNNQGSLPNTVSLSSGFSPFYTQPFISPVQPLRNPSLSLHQ
ATLSPSLSSKNPLDEILDLTVSSPSPSPDSTEAGLSLDSLSGHAAAFGDDFNLESLISQN
APNAQHAAPMQQPLLLPQHQQQQQQQQQQQQQQQHLQANNHHQDLLDFFDLPLSPQMPTQ
KASPSSSTSSCSSSTTSSTSSVSNSLVSHTGLLPTSTLIATSSSSSLFSSPPSSSTLFPN
PSPCYSSSFLLPQSDSLSLPNGHCSPGTLDVREALNSMLQAGPDRKSVIQYRQQD
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccctcccctcagcgctggccatggacggggagaactacctgcatccagagggc
cctcagctggacagcagcttgttctcagtggccccctctaacatggagagttcaatatac
gcgtcctctggatcctggggatccttttctcagcaggctggatacagcatacactgccct
atgcaatctggaaaccagcaataccacttgaacagcagcactaccaccaccactccggat
gtgcacatggacatgtactcgggattccctgatgtggacttttccctcaacctccctaga
aatggagatttcccccaggacctgtcctgcattgatgacctctccacaaactctctgttc
tcctctccggctgactcactgtcggaatatgctgatacccagtccttcatcagcacagat
aacctggacacagtgcccaccctctgggacgtcaacactagtaccaccacaccagcacag
agcctagagcagaatggcaccagcaggtttcaaggcttggccagtttggatgatataact
gctattatcagcaccccacctttaggaggattccagcctcaaagaaaccagcctccacca
gaggaggaagaggatgcagaggaagaggagaccgaggaactgggacacgtagacacatat
gcagagtacaaaccttcaaaatccaccataggaatttctcatcctgacatagtggtggag
accaacacactatccagtgtccctcctcctgacatcacatacactctgtctatccccgag
tcaactataaacagtggcttgctgtctgctctgcagctagaggccatcatctatgcctgc
cagcaacacgaggtgatccttcagaacaaccagagggcaggcttcctgatcggagatggg
gcaggggtcggaaagggacgcactgtggcaggaatcatcttggagaattaccttaaggga
aggaagaaagcactatggttcagcatatccaatgacctgaaatttgatgcagagagagat
ctcaaagacatagatgcaccgaatattcctgtgcatgccttaaacaagataaagtatgga
gacacagctacctcagaaggagtcctgtttgcaacttactctgcactgattggagagagc
caggcaggagggcagcgccggacgagaattaaacagatcctggactggtgcaagccagac
tttgatggagtcattatttttgatgaatgccacaaagccaagaatgccacatctacaaag
atgggcaaggcagtgcttgacctgcaaaacaagctgccacgggccagagtggtgtatgcg
agtgccacaggtgcctctgagccaaagaacatgatctatatgagccgcctgggaatctgg
ggtgagggcacgcccttcagagtctttgatgacttcctgcacgccattgagaagagaggt
gtcggtgccatggaaattgttgccatggacatgaaagtgagcgggatgtacatcgccagg
cagttgagcttctcaggggtatctttccgcattgaagagatcggactggacagtgacttc
aaactggtctataacaaagctgccaaactgtgggcagaggcgttgcaagtgttcatgcgt
gcagctgatgagctgggcctggtcagcaggaagtctctgtgggggcagttctggtcgtct
caccagcgcttcttcaaatacctctgtatcgctgccaaggtccgctgcctggtggagctg
gcccaaaaagagctggaggcgggaaagtgcatcgttattggccttcagtctactggagag
tcccgcaccagagaagtcctggatgagaatgacgggcatctcgacagatttgtctctgca
gcagagggagtattccagtctcttgtaacgaagcatttcccttcagagaaacagaggaga
gagaaggcgccagggaataagagaaaacggaagcctagaggtcgccagcccaaggtaccc
aagcacacagtggacagcggcggtgtgatcaacatcactgatgacagcagtagtgactcc
gatggcatggacacagactccaactcctcccctgattccctgctagacaacgatgatgtc
atcttcgtgaaccagactagctaccagacagcaaggatagaggaaatgaagcagggcctc
ctcaacaaaatatccgagctgggaaaagaactacctctcaataccttggatgagctcatc
gataagtttggcggaccagataaagtctcagagatgactggtcgtaagggtcgtgtggtg
cggcgtcctgacggcagcgtccgttatgagtcacgggctgagcagggtcttaccatcgac
cacatcaacatcaaggaaaaagaccgcttcatgagcggagagaagttggtggccatcatc
tcagaggcagccagctcggggatttccctgcaggcggacaagcgagtgaaaaaccagaga
cggcgggtccacatgaccctggagctgccgtggagtgcagacagggctattcagcaattt
ggtcgcacccatcggtccaatcaggtgacggccccagagtacatcttcctcatctcagag
ctggctggggagagacgctttgcctccattgtggcaaagagactagagagcctgggtgcg
ttaacccacggagacagaagagccactgaatccagagacctgagcaagtacaattttgaa
aacaagtatggtaccaaggctctggataaaatcaccaaagcaatcctaggccacatagag
aacaaggtgccccctcccaaaggctacccggcgggtgaagctatgttcttcagagacatg
aagcttggaatgatggatgtgggcatcttttgtaaggagcctcgctttgggatcagtact
gagaaagactgcagtatcaccaagttcctaaatcgcatccttggcctggaggtccacaag
cagaactatctcttccagtacttcactgataactttgactacctaatcgagaaggacaag
aaggagggcaaatatgacatgggaatactagaccttgccccaggtaacgatgagatctat
gaggagaagcaggaaactttcctgacagctggaaacccacaggatggacaggttgttctc
tataagatcagtgtggacagaggtatgccctgggatgaggcctacaacaggtcgctacag
ctcaccggtcctgatgagggattctacctgtcccagaagctgcgaggaaaccacccatgt
gtgctgctggctgagcaaggaagaggcaagaacttcatagtcttcaaacccaacatcggc
aagcagactcaccccgagagcctggacaacctgcaccaacgttaccggaaggtgactcca
gaggaagccagagacagctgggagaaccagttcaccttctccttcaagaagtgtagccat
gccaactggaatggaaagtgtaagaaaattgaagaaggccaggagtgtctgcagggcatg
cgcctccgtcagtaccacatgttgtgtggtgctctattgcgtgtgtggaagcgtgtctcc
gacgtggtgtctgacatcaccagctccagcattctgcaaattgtccgcctcagaaccaag
cagcataacaaacaagttggtatcaagatcccagagaactgcgtggcccgcgtgcgcgag
gagctgttgctaatggacgaggaggtgaagaggaggcgaaaggagaaggagcagcaggct
gtggagcagcggctggctgaggagcgcttgcgtaaaatggagcaggacaacaaacacctg
ctggcaaatctgttcaaccagaaacccatgcttacccagtcccttgctcagtctctcgcc
cagaaactgaaccaaaaccctctacaaaggacacagctacagagaatccaaggccaaacc
caggccactttacggccgcctccccagaacttaaccctgatgtctctacagagaaatccc
aaccaaccccagcaacggacccacaacagctggcccaacaattccaccaccacctccacc
aacaaccagggctctctgcctaacacagttagcctcagctccggtttttctccgttttac
acccagcccttcatttcccccgttcaaccgctgaggaacccgtctctttcactccatcag
gccacgctgtctcccagcttgtcttccaagaatcccctggatgagatcttggacctgact
gtcagctcaccgtccccctccccagacagcacggaggctgggctgagtctggacagcctg
tcgggacacgcagcagcattcggcgatgactttaatctggagtctctgatttcccagaat
gcaccgaatgcccagcacgctgcaccaatgcagcagcctcttttgctaccacagcatcag
cagcagcagcagcagcagcagcagcagcaacagcaacagcaacacctacaggccaataat
caccaccaagacttattagatttttttgacttgcccctgtccccccagatgcccacacag
aaagccagcccttcatcctctacctcctcctgctcttcctccaccacgtcctccacctct
tctgtgtcaaacagcctggtttctcacaccggtctcctgcccacatccaccctcatcgcg
acatcctcctcctcctctctcttctccagcccgccctcctcttcgactctgtttcccaac
ccctccccctgctactcttcctcctttctcctcccccagtcagactctctgtccttaccc
aacggccactgcagtcccggcactctcgacgttcgcgaggctctgaacagcatgctacag
gcgggaccggaccgcaagtccgtcatccagtaccggcaacaagactga
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integrated database retrieval system
