Lates calcarifer (barramundi perch): 108879029
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Entry
108879029 CDS
T04895
Symbol
si:dkey-183n20.15
Name
(RefSeq) RING-HC_RNF170 domain-containing protein
KO
K15707
E3 ubiquitin-protein ligase RNF170 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108879029 (si:dkey-183n20.15)
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108879029 (si:dkey-183n20.15)
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108879029 (si:dkey-183n20.15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4_2
zf-RING_5
zf-RING_2
TRAF3_RING
zf-ANAPC11
Prok-RING_4
zf-C2H2_ZFAND2
Motif
Other DBs
NCBI-GeneID:
108879029
NCBI-ProteinID:
XP_018525664
UniProt:
A0A4W6D2R4
LinkDB
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Position
LG17:complement(7760254..7764943)
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AA seq
260 aa
AA seq
DB search
MHPYHRSQSRPDHLFSEGPAGQDHCGPSRSLCGASAHSASTYVSYHKESAEIYPPTSNRD
SHCPVCLQTASFPVQTNCGHVFCAPCLIAYWRHGSWLDAISCPLCRQKVSVLCHLFNESR
SDRQSKEVLGEITDYNKRYSGAPRRVTDYLCDAPLLLQLLARGLGTIGGLVWLFFFRVAL
CCVGTVVSLSSPPLDSVSASSASPLETDPTLCGLLGVLDDLVVVILLLICVININQQITP
DRGGHSANATTPQGVMGNSL
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgcacccataccacagatctcagtccagaccggaccatctgttctctgagggcccagca
ggtcaggatcactgtgggccatccagatctttgtgtggtgcatcagcgcactcagcatca
acatatgtgagctaccacaaggaatctgcagagatatatccaccaacaagcaatcgagac
tcacactgcccagtctgcctgcagacggccagcttcccagtgcagaccaactgtggccat
gtgttctgtgctccctgccttatcgcctactggagacatgggtcatggttggatgcaatc
agctgccccctctgtagacagaaggtcagcgtgctgtgtcacctatttaacgagagtcga
tcagaccgacagtcaaaggaagtacttggggaaatcacggactacaacaaacgttattct
ggagccccacgacgggtaacagactacctttgtgacgcgcccctcctcctgcagttactg
gcccgtggccttggcaccataggagggcttgtgtggctgtttttcttcagggtggctctg
tgctgcgtggggactgtggtgtccctctcctcccctcctctggactcggtctctgcatcg
tcagcaagccccctggagacagaccccaccctctgcggactgctcggggtcctggatgac
ctggtggtggtcattctgctccttatctgcgtcatcaacatcaaccagcaaataacaccg
gacagaggaggacactctgcaaatgctaccaccccacaaggtgtgatggggaattcactg
tag
DBGET
integrated database retrieval system
