Lates calcarifer (barramundi perch): 108879055
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Entry
108879055 CDS
T04895
Name
(RefSeq) E3 ubiquitin-protein ligase LNX isoform X1
KO
K10692
ligand of Numb protein X 1/2 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108879055
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108879055
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
108879055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_3
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-RING_5
zf-C3HC4_4
zf-P11
zf-RING_4
U-box
Prok-RING_4
zf-rbx1
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
108879055
NCBI-ProteinID:
XP_018525706
UniProt:
A0AAJ7LM86
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Position
LG17:complement(6239039..6271986)
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AA seq
803 aa
AA seq
DB search
MLLTISSVDPTRVFMNIQVESIQPEGAMAMAGASAAPLSPSDYGLLSPPPDLCVACGHSH
QLEENHEYLYKEEVDDDLVCHICLQPLIRPLDTPCGHTYCQECLTSFLLESDFCPVCRAP
LMLQSCRKPSLLVHKLLDKLIVACPFTDHCTETLSRGELEDHIKSRCKGASHYGLSADRK
RRSQEGECTDSTSELTIATLPNDGPTSAAVALLSDEPGLVNPAFDPSMEDNSQSGSTTSL
AARSSTKKSEFRNFDRSSVRSRSFRRLNRAFSVLRRTKSGNAVSNETSEERDNARNSTVP
QEGMHQVLALPQLHHLIPDGEVTSIKITRVDPSEPLAISIVGGNETPLVRILIQDIYREG
VIARDGRLLPGDMILKVNGIDISNVPHCYAMATLKQPCQLLRLTVLREQRHRYRSHSHSH
PHGHGHSHDGAGGHPSHGLPHHPLRDDSIHVVLNKSTPEEQLGIKLVRRPEEHGVYIFHL
LEGGLAARDGQLCVGDRVLAINGHDLRYGAPEHAALLIQASEERVHFIVSRQICLPTPDI
LQEAPWGMDGPPPYSPVDIEQTLLDSCQKPACYEKTVSLTKEPYDSLGMTVAGGMSSRGW
DLPIYVTNVDPDGVVGQEGSIRKGDILLNVNGVDLTGVTRGEAVANLKNTSSPVVLKVLE
MRPPEESLQECTLPPCLTPSPTDSTKSPLPNDDYSPLWVSWLQLPRHLYCCKDIVLRRST
SGSLGFSIVGGQEEVNCNQSFFIRSIVEGTPAYNDGRIRCGDILLEVNGKSTWGMTHTAL
VRLLKELRGRITLTIVSWPGSLL
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgctgctaacgatctcctcagtggatcctacaagagtcttcatgaatatccaggtggag
agtatacagcctgagggtgccatggcgatggcaggagcatcggcggcacccctttccccc
tcagattatggactgttgtctccgcctcctgacctgtgtgtggcatgtggccacagtcac
cagctggaggagaaccacgagtacctctacaaggaggaggtggacgatgatctcgtctgt
cacatctgcctgcagccactcatcaggcccctggacacgccctgtggacatacctactgc
caggagtgtctcaccagcttcctgctggaaagtgacttctgccctgtgtgccgcgcgccc
ctcatgctgcagagctgcaggaagcccagcctgctggtgcacaagctgctggataagctg
attgtggcttgccccttcactgaccactgcactgaaacactgtcccgtggtgagctggaa
gaccacatcaagagcaggtgtaaaggggcctctcactatggcctctcagcagacaggaag
cgtcgctcgcaggagggcgagtgcaccgacagcacatcggaactcaccattgccacgctg
cccaacgacggccccacctccgccgccgtggccctcctgtcggacgagccgggtctggtc
aatcccgccttcgacccgagcatggaggacaacagccagtcgggcagcacgaccagcctg
gccgcccgcagcagcaccaagaagagtgagttcagaaattttgaccgctcttccgtgaga
agccgctccttcaggaggctgaaccgggcattcagtgtcctgcggaggaccaagagtggc
aacgcagtgagcaatgagacgtctgaggagagagacaatgccaggaattccactgtgccg
caggaaggtatgcatcaagtcctggctcttcctcagctccatcacctgatccctgatggt
gaagttaccagtattaagatcacgcgggtggatccctcagaaccgctggccatcagcatt
gttggcgggaacgagaccccattggttcgcatcctcatccaggatatctacagagaaggc
gtgattgcacgggatggacgtttgctgcctggggacatgatcctgaaggtaaacggcatt
gacatcagcaacgtaccacactgctatgccatggcaaccctaaaacagccgtgccaactc
ctccgacttaccgtgctcagagaacagcgccatcgctaccgctcacactcgcacagccac
ccacatggtcacgggcacagccacgatggtgccgggggccacccgtctcacggcctaccc
caccatcccctgagggatgacagcatccatgtggttctgaataaaagcactccagaggag
cagctgggcattaagctggtgaggcggccagaggagcacggagtctacatctttcacctg
ctggagggcggcctggcagctcgggatggacagctgtgcgttggtgaccgtgtgctggcc
atcaacgggcacgatctccgttacggagcaccagaacatgctgctctgcttatccaggca
agtgaggagcgtgtccacttcatagtatctcgtcagatctgcctgcccaccccagacatc
ttacaagaagcaccatggggcatggatggtcccccaccatattcccctgtggatattgag
caaacactgctggactcttgtcagaagcctgcgtgctacgagaagacagtgtctctgact
aaggaaccatatgactccctgggtatgacggtggcaggtggcatgtccagcagagggtgg
gacctccctatttatgtcacaaacgtggaccctgatggagtggtgggacaggagggctcc
attcgcaaaggtgacatcttgctaaacgtgaacggggttgatctgacgggggtgacgcga
ggcgaggctgtggccaacttgaaaaacacctcctctcccgtcgtgctcaaggtcttggag
atgcgtcctccagaagaaagcctgcaagagtgcacgttgccgccctgtctaacaccctcg
cccactgatagcaccaagagtccgctgcccaatgacgattattccccgctgtgggtgtca
tggctgcagctacccaggcatctctactgttgcaaagacatcgtcctgcggcggagcact
tcgggcagcctgggcttcagtattgtgggaggtcaggaagaggtcaactgcaatcaatcc
ttttttatccgctccattgttgaggggacgccagcctacaatgatggcaggataaggtgt
ggggacatcttgctcgaggtgaatgggaagagtacatgggggatgacccatacagcactg
gtgcgccttctgaaggagctgcggggcagaatcaccctgaccatcgtctcctggccaggc
agcctgctgtag
DBGET
integrated database retrieval system
