Lates calcarifer (barramundi perch): 108879091
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Entry
108879091 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: capping protein, Arp2/3 and myosin-I linker protein 3-like
KO
K20493
leucine-rich repeat-containing protein 16
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108879091
Membrane trafficking [BR:
lcf04131
]
Others
Actin-binding proteins
Nucleation-promoting factors (NPFs)
108879091
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARMIL_C
Carm_PH
LRR_6
Myosin_TH1
Motif
Other DBs
NCBI-GeneID:
108879091
NCBI-ProteinID:
XP_050933188
UniProt:
A0AAJ8BKB0
LinkDB
All DBs
Position
LG17:complement(6588972..6618526)
Genome browser
AA seq
1537 aa
AA seq
DB search
MASKEITASGFVSVNKDITESIKKIIDKTSIKFVRGIKLDAKNGKTEDRILVLTTWRLYF
LAPKTPAKVESTFNFLEIRALNSHPEHQVIIDTDKSSYSLRFESREHLNHVVSHINFALS
RIFNNSIFAPSICHSDSDLSEGSRKYSPSSETSVETQRACGGFSETYAALCDYNGISCKE
EVQWDVDTIYHSQDNREFNLLDFSHLESRDLAVIVASMAYNTWFTKLYCKDLRIGSEVTE
QVLHTVSKSSSLEEITLENVGLKSDFPQKMSAALSENPASVIHSLNLAHNSLDNQGVSNL
IQQVCRLSKGLRLLNLSKTSLTSKGVVSLSQALCSSDEYSNSLLHLDLSKNPGVLSGEDA
SNLYLFLSQPNCLVHLDLSGTDCSVDSLFGALLRGCCADLSFLNLSKNSFSHRKVKDTLP
LFRQFFSSAFSLTHVSLASMKLPPDVLRALLTGLTSNPHINDLHLDISSCELRSAGAAVI
QELFPRVSSIATLDISDNGLDADLLTVLPALSRHPSLRHLLLGKNFNIKNRVLDEVLQKL
VQLIQEEECALQTLSLNDSRLRSRGTVLVNALGSNTCLRKVDLSGNNMDDIGAKMLSKAL
QINTTLRSVTWDRNNTSAAGFLDVARALEHNFTLQYMPLPLSDISQAYRSAPERTEQALT
KIQRALVRNNQTQRFSQRQALRLHQGLVTSTAEQVMERLCVRVQQQVCMLRGVGEMEELQ
AAKQVLKEARNSRALYPSLCELAHVLSVDGPVRQRLDSLAGELAKAADKELQVIVDSMVS
LCRELCPLSSSAAERLSPPLSSVSERVSIPRSAIRTALMERAAQDIHRALEEVKLSVVSY
LTNSIVDQILQELYATHKTLTRQVSHLKRWEGTCEDGTGWRFNRHRDSLDITDEELGTSI
DTIAIKKHSSRTRRIRPVSTRLSLCDDSSSSPPPSVPSYSSPLSRSASWEGLSELPTQGL
PLHHVTRVRPRPPRRHKGGHMPAETQCSENGGISPLDDGLPDFYTKRVLPDSQLSSLHKA
HSLRRKKRRNMLAIFGFRKNRNQTLSSQGPQESEAEIYGDGCHTVATAPTGTATENVYTL
LQPPRSTARAGSPGEGADGKVSDHQAKNALVLSPPPVPGIPHPGNKHPFYSPREKSEGDA
VFDQPGEADKYWADDKQRTSEVLQADKQWMEARQSDQHAERQRFDDRLQERTFGEPRTID
RQTDRYWTESRHPDRHMDRQWTVDRHTQRQIDRKIERQWMGGRQIERSWSENRPTDVQVD
NQWTESRHPGRKTDRQVHALHLAQRPLPPYPSDRTPSPKQETDPLKSTEATAPDWHQQDT
QGDRHMCSDTGGGFTEGWRSSAGGGGGGRAASSASKPDPPPQSSKPNLSKLRQRHRLESS
DALPGTCTEEEGDTERDPGKMEKKEREKRRDSESQPPPIPEKPKTSSYVTFPKESANERN
LPPPPVPPPVIKPVYGLPDRAASQGDEGLRPQAPVKPQRNRKAMSCDAGTDRESPNNVEK
PPNRKPPVKKPRLPQNRNKSLDLSDSINSAPGHSELL
NT seq
4614 nt
NT seq
+upstream
nt +downstream
nt
atggcttctaaagagatcactgcctctggtttcgtcagtgtgaacaaggatatcacagaa
agcatcaagaagattattgacaaaacatctatcaagtttgttcgtggcattaagcttgac
gccaaaaatggtaaaacagaggacagaatactggtcctcacaacatggcgtctctatttc
ctggcgccaaagactcccgctaaggtagaatccacattcaacttcttggagatccgagct
ttgaattcccaccctgagcaccaggtcatcattgacacagacaagtccagctactccctg
aggtttgaatcacgtgaacacctcaatcatgtggtcagccatattaatttcgctctgtct
cgaatattcaacaactccatatttgccccttccatctgtcattcagacagtgacctttct
gaaggcagcaggaagtattcacccagctcagagacttcagtggaaactcagagggcctgt
ggaggcttctccgagacctacgccgctctgtgcgactataatggcatcagctgcaaggag
gaagtgcagtgggatgtggacaccatctatcactcccaggacaaccgagagtttaacctg
ctggacttcagccacctggagagcagggatttggcagtgattgtcgcatcaatggcatac
aacacctggtttaccaaactgtactgcaaagacctgcgcatagggtcagaggtcacagag
caggtcctgcatacagtcagcaaatcctccagtctggaggagatcactctggagaatgtt
ggactgaaatcagatttcccacagaagatgtcagctgctctttcagagaaccctgcctct
gtcatccactcgctcaacttggctcacaactcactggacaaccaaggtgtatccaactta
atacagcaggtgtgtcgcctcagcaagggacttcgcctactcaacctctccaagacctca
cttacctccaaaggagttgtctctctctctcaggctctgtgttccagcgatgagtactcc
aactctctcctgcacctggacctgagcaagaaccccggggtcctctcgggggaggatgcc
tcgaacttgtatctgtttttgtctcagcccaactgcctggtccatttggatctgtcaggc
acagattgctctgtggactcactatttggggctcttctgagggggtgttgcgctgatctt
tcctttctgaatctttccaaaaattccttctcccacaggaaagtgaaggacacgctgccg
ttgttccgtcagttcttcagctcggccttcagcctcactcatgtcagcctggcctctatg
aagctgccccccgatgttctgagggctctccttacagggttaacctccaatcctcatatc
aatgaccttcatctggacatcagtagctgtgagctaagatctgcaggagctgctgtaatc
caggaactcttccccagagtctcctctatcgccactctggatatctcagacaacggtctt
gatgcagacttgctcacagtgctgccagctctctccagacacccctccctcagacacctt
cttctgggcaagaacttcaacatcaaaaacagggttctggacgaggtcctgcagaagctg
gtgcaactcatacaggaggaggaatgtgccctgcagactctgtccctgaatgactcacgc
ctgcgctccaggggcaccgtgctggtcaacgccctgggcagcaacacctgcctcagaaaa
gtggacctgagtgggaacaacatggacgacatcggagccaagatgttgagcaaagccctg
cagattaacaccacgctcaggagtgtgacatgggatcgcaacaacacctccgcagcagga
tttctcgatgtggcccgagcacttgaacataatttcaccttgcaatacatgcctcttccc
ctaagtgacatcagccaggcgtaccgcagcgcccctgagaggacagagcaggcactgacc
aagatccagcgtgctctggtgaggaacaaccagacccagcgcttctctcagcgacaggct
ctgcggctgcaccaaggcctggtgaccagcacagccgaacaggtgatggagcgcctctgt
gtgcgtgtccagcagcaggtgtgtatgttgcgaggtgttggggagatggaggagcttcaa
gctgctaaacaagtgctaaaagaggccaggaattcccgcgcactctacccttcactgtgt
gagctggctcatgtgctgtctgtggatgggccggtgcggcagaggctggactctctggct
ggcgagcttgccaaagctgcagataaggagcttcaggtgattgtcgactcaatggtgtct
ctctgtcgcgagctctgccctttatcctcctctgcggcagagagattgagtcccccactc
tcatctgtctccgagcgcgtgtccatccctcgctccgccattcggacagccctgatggaa
agagcggcgcaggacattcaccgagccttagaagaagtgaagctgtcagtggtttcctat
ctcaccaactccatcgtggaccaaatcctgcaggagctctacgccacccacaaaaccctg
acccggcaggtgtctcaccttaaacggtgggaggggacatgtgaagatgggacaggttgg
aggtttaacagacacagagactctctggacatcacagatgaggagctcggcaccagcata
gacacaatagccattaagaagcacagctcgagaacaagacgaatacgacctgtctccacc
aggctgagtctgtgtgatgactccagctcctctccacccccctctgttccatcatactca
tcaccactatcccgctcggcatcctgggagggcctgtcagagctgcctacacagggcctg
cctctccatcatgtgacacgggttcggccaagacctccacggaggcacaaaggagggcac
atgcctgctgagacacaatgcagtgaaaatggaggaataagccctcttgatgatggactc
ccagacttctatactaaaagggtgctccctgatagtcagctctcgtctctgcacaaagct
cactctctgaggaggaagaagaggagaaacatgctggccatcttcggtttccgtaaaaac
cgcaaccaaactctgtccagtcaggggcctcaggagtctgaagcagagatttatggagat
gggtgtcacactgttgctacagcacccacagggacggccacagagaatgtatacacactc
ctccagcctccaaggtccactgccagagctggatctcctggtgaaggggctgatgggaaa
gtgagcgatcaccaggcgaaaaatgctcttgttctgagtccaccaccggtaccaggcatc
cctcacccaggaaacaaacacccattttattctcccagagagaaatctgaaggagacgct
gtgtttgatcaaccgggagaggcagacaagtactgggcggacgataaacagaggacatca
gaggtgttacaagcagacaagcaatggatggaggcgaggcagagcgatcagcatgcagag
agacagcggtttgatgacaggctgcaagaaagaacttttggagagccgagaacgatcgac
agacaaacagacagatactggactgagagcagacatccagacagacacatggacaggcag
tggactgttgacagacacacacagcggcagattgacagaaagatagaaagacagtggatg
ggcggcaggcagatagaaaggtcgtggtcagagaacaggccgacggacgtacaggtggat
aatcagtggactgagagcagacatccgggcagaaagacggacagacaagtgcacgcactt
catttggctcaaaggccgctgcccccgtacccatcagacaggacgccttcaccaaaacag
gaaacagatcctctgaaaagcacagaggcaacagctccagactggcatcagcaggacacg
caaggagacagacacatgtgttccgacactggtggagggtttacagaaggatggagaagc
agcgcaggaggaggaggaggaggtcgagctgcttcctctgcatctaaacctgatccccca
ccgcaaagcagtaaacccaacctgtccaagctgaggcagagacatcggctggagagctca
gacgctctcccaggtacctgtacagaggaggaaggagatacagagagggatcctggaaag
atggaaaagaaagagagagaaaaaagaagagattcggagagtcagcctcctccgattcca
gaaaagccaaagacatcctcatatgtgacttttccaaaagaatcagccaatgagaggaac
ttacctcctcctcctgtgccgcctcctgttatcaagccagtttatgggttaccagacaga
gctgcaagtcaaggtgatgaaggactgagacctcaggcaccagtgaaaccacagagaaac
agaaaggccatgtcttgtgacgcaggcactgacagggaaagccctaataacgttgagaag
cccccaaatcgcaaaccccctgtgaaaaaacctagactaccccaaaacagaaataagtca
ctggacttgtctgacagcatcaactcagcacctggtcacagtgagctgttgtga
DBGET
integrated database retrieval system
