Lates calcarifer (barramundi perch): 108879100
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Entry
108879100 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04010
MAPK signaling pathway
lcf04020
Calcium signaling pathway
lcf04144
Endocytosis
lcf04510
Focal adhesion
lcf04540
Gap junction
lcf04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108879100
04020 Calcium signaling pathway
108879100
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108879100
09144 Cellular community - eukaryotes
04510 Focal adhesion
108879100
04540 Gap junction
108879100
09142 Cell motility
04810 Regulation of actin cytoskeleton
108879100
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lcf01001
]
108879100
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
lcf04090
]
108879100
Enzymes [BR:
lcf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
108879100
Protein kinases [BR:
lcf01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
108879100
CD molecules [BR:
lcf04090
]
Proteins
108879100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Ig_3
Pkinase
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
V-set
VEGFR-1-like_Ig-like
C2-set_2
Motif
Other DBs
NCBI-GeneID:
108879100
NCBI-ProteinID:
XP_018525778
UniProt:
A0AAJ7LMI9
LinkDB
All DBs
Position
LG17:6346561..6364816
Genome browser
AA seq
1471 aa
AA seq
DB search
MDEIKTSVVLGGILAVLVSVTCGLSPPTIVSNDEEFILQPNSVFNISCTGKRSVVWEEPL
PANTFVLPGYYTATLFIYNATVENTGYYMCVYETPEDEVESEPEEENEAGIYVFVPDPKA
PFVPETPDNLVVPMDMTGVPISCRVSDPFSDVILRSVPSGEEMPAYYDNKMGFFRNLSPG
QYQCETTVNGQTVRSVVYTVKVEAPAEMEDFDVEVKASEETVRAGEPFSVTCVAPTGLGF
QQQWLHPKKQAVDAVQTKQTLPDRVIYTLNILKATTQDSGTYECSITHEISREVRVSSVA
VTVIEENSFVILDHSGILATEFVSLLEETEFTILIDAYPAPKVTWLKDGKAIPGNYYVHT
KTSHFEGNRYQSILTLRQPLEKDNGNYTITALSGSRSAQFSFNLKVKAPTAMMFPPSSAP
MLLPQIDEMVVPLHTPFTLTCRGEAQLAWETPLDVLEQTQEDNSGLFVTAITVDNATAMH
TGYYTCFYSKNTTEETEDSSIYIYVPDPDVPFVPSPVPFGNHVLSDHEEMEIQCRVSDPS
ANVTLINADTQQPVPSVYDSKRGALGVFTAGTYMCKALVNGQEHYSGEYIVHGWTGGAAL
HVELTAKRTALLVGETLTVTCLARGSEILEDHWKYPGKLANRAIKTVHENKRDQEILYTL
TIPQASTKDSGIYSCSITDIISNESQTKQLAIRVFASEFLAVRPQFGEYESAELDEVREF
RAEISSFPTARVTWLKDGSPLSDVTAEISTSLRQLSETSYMSALTLIRAKEEDSGNYTMR
VQNGNQTRDVGLVLEVKVPAVIVELMDIHHGSATGQSVVCITRGQPTPVVEWFICKNIKH
CANDSSSWAPLSTNSTEITVDSHMDEDNNLESQVMFGHLENTLAVRCLARNEMAAVSREV
KLVSSGPHPELTVAAAVLVLLVIVIISLIVLVVIWKQKPRYEIRWRVIESVSPDGHEYIY
VDPMQLPYDSRWEFPRDRLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTAR
SSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRENFL
SLNPEKNKKELDIFGINPADESSRSYVILSFESKGDYMDMKQADNTQYVPMLEMSNASKY
SDIQRSNYDHPPSQKGSSEGEIDNLLSDDMNEGLTTTDLLSFTYQVAKGMEFLASKNCVH
RDLAARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNLYTTLS
DVWSYGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMSKPEHAPHDVYEMMMKCWNSE
PEKRPSFLGLSETVASLLPSSYKRHYERVNHEFLKSDHPAVTRVCMENDDAYIGITYKNQ
GKLKDRESGFDEQRLSSDSGYIIPLPDLDPISDDEYGKRNRHSSQTSEESAIETGSSSST
FAKREGETLEDITLLDEMCLDCSDLVEDSFL
NT seq
4416 nt
NT seq
+upstream
nt +downstream
nt
atggatgagataaagacgtctgtcgtcttggggggtattttggcggtgctagtttcagtt
acctgcggactgtcgccaccaactattgtgtccaacgacgaggagttcatcctgcagccc
aactccgtgttcaacataagttgcaccggtaaaagaagcgttgtttgggaggaaccccta
ccggcaaacaccttcgttttaccgggatactacacggcaacgctctttatttacaacgcg
acggtagaaaacaccggctattacatgtgtgtctacgaaaccccggaggatgaagtggag
agtgaaccggaagaagaaaatgaggcgggaatatatgtcttcgtgccagatcccaaggcc
ccgtttgttcctgagacccctgataacttggtagtccccatggacatgactggagtcccc
atctcctgccgagtatctgaccctttctcagatgtcatcctgaggagtgtccccagtgga
gaggagatgcctgcctactatgacaacaagatgggcttcttcaggaacctctctcctggg
cagtatcagtgtgaaaccactgtgaacggccagacagtcagaagtgttgtttacactgtg
aaagttgaggcccctgcagagatggaggatttcgatgtggaagtaaaagccagtgaggaa
actgtaagagctggggaacctttcagtgtcacctgtgtcgctcccactggactgggcttt
cagcagcaatggctccatcctaaaaaacaggctgtggatgcagtgcagacgaaacagact
ttacctgaccgggtcatatacacgctcaatatcctaaaagccaccactcaggacagcggc
acctacgaatgctccatcactcacgaaatcagtagagaggtcagagtcagcagcgtggcc
gtcactgtcatcgaggagaattcctttgtgatactggaccacagtgggattctagcgacg
gagtttgtcagccttttagaggagacagagtttacgattctcattgatgcttacccagcc
cctaaagtgacatggctgaaagatggcaaagccataccagggaactactatgtccacacc
aaaacaagccactttgaagggaataggtatcaaagtattctgacattacggcaacctctg
gagaaagacaatgggaattacacaattacagctcttagtggttcccgctctgctcagttc
tcctttaacctcaaagtgaaagcccccactgcaatgatgttcccaccatcctcagcccct
atgctgctgccacagatagatgagatggtggtgcccctccacactcctttcaccttgacc
tgccgtggagaagcacagctggcctgggagacaccgctcgatgtgctcgagcaaacgcag
gaggacaacagtggcctatttgtcactgccatcactgtggataatgccactgcaatgcac
actgggtactacacttgtttctacagcaaaaataccactgaggagacagaggacagcagc
atctacatctatgtgccagatccagatgttccctttgtgccatcaccggtgccttttggt
aaccatgtcctgtccgaccatgaggagatggagatccagtgtcgagtgtctgatcccagc
gccaacgtgaccctgattaacgctgacacccagcagcctgtgcctagtgtttatgacagc
aagaggggtgctttgggggtattcactgctggaacctacatgtgtaaggcccttgtaaac
ggacaggaacactacagcggggaatacatcgtccacggctggacaggtggtgctgcactg
catgttgagctgacagccaagcggactgctcttctggtaggagagactctcacagtcacc
tgtctggctaggggttctgagattctggaagaccattggaaataccctggaaaactggct
aatcgtgctatcaaaaccgtgcatgagaacaagagggatcaggagatcctttacaccctg
acaatcccgcaggcttcaaccaaagacagtggaatctactcttgctccatcactgatatt
attagtaatgagagccagacaaagcaactagctattagagtttttgcaagtgagtttctg
gctgtccggccacagtttggagaatatgaatcagcagagctggatgaggtccgcgagttc
agggccgaaatcagctccttccccactgcacgcgtcacttggcttaaagatggaagccca
ctcagcgatgtgacagcagagatctccaccagcctccggcagctcagtgagaccagctac
atgagtgctctcaccctgatccgagccaaagaggaggacagtgggaactacaccatgcga
gtgcagaatgggaaccaaactcgggatgttggtttagtgctggaggtcaaagttcctgca
gttattgtggagctgatggacatccaccatggctcagccacaggccagtctgtggtgtgc
attactagagggcagcccacccctgtggtggagtggttcatctgcaagaacatcaaacat
tgtgcaaatgactcgtcctcctgggcccccctctccaccaactccacagagatcacagtg
gactcccacatggacgaggataataacctggagagccaggtcatgtttggtcacctggaa
aacacactggccgtccgctgcctggccaggaatgaaatggctgccgtcagcagggaggtc
aaactggtgtctagcggccctcaccctgagctgactgtagctgctgctgtgctggtgctc
ctggtcattgtcatcatatcactcattgtcttggttgttatctggaaacagaaaccacgt
tatgagatccgctggagggtcatagagtctgtgagcccagatggccatgagtacatctat
gtggatcccatgcagcttccctatgactccagatgggagtttccccgtgacagacttgtg
cttggtcgtatcctgggctctggagcctttgggaaggtagtagagggcaccgcttatgga
ctcagtcgctcccaacctgtcatgaaggtggcagtgaagatgctgaaacccacagcacgc
tccagcgagaaacaagccctgatgtctgagctaaagatcatgactcatcttggacctcat
ctaaacattgtcaacctccttggagcgtgcactaagtcaggccctatctacattatcaca
gagtactgcttctatggggacctggtcaactacctgcacaagaacagagagaacttcctg
agcctaaacccagagaagaataaaaaggagctggatatctttggaatcaaccctgcagac
gagagcagcaggagctatgtgatcctgtccttcgagagcaaaggagactacatggatatg
aagcaagctgacaacactcagtatgtgcccatgctggagatgagcaatgcctccaagtac
tcagacatccagaggtccaactacgaccacccgccctcccagaaaggctcaagtgagggt
gagatagacaacctgctgtcggacgacatgaatgagggcctcaccaccaccgacctgctc
agctttacctaccaggtggccaaaggcatggagttcctggcttccaaaaattgtgtgcat
cgggacctcgcagccaggaatgtgcttctctctcagggcaagatagtgaagatttgtgac
tttggactggccagagacatcatgcatgacaacaactatgtctccaaagggagcaccttt
ctgccagtgaagtggatggcaccagagagcatttttgacaacctgtacactactctcagt
gatgtttggtcctacggcatcctcctctgggagatattctccttaggcggcaccccatac
ccaggaatggtcgtggactcgagcttctacaacaagatcaagagtggatacaggatgtcc
aaacctgaacatgcaccgcatgacgtgtatgaaatgatgatgaagtgctggaacagtgag
ccggagaagaggccttctttcctgggtctgagtgaaactgtagcttctttgctgccctcc
agctacaagagacattacgagagggtaaaccacgagttcctgaagagtgaccaccccgct
gtgactcgggtgtgcatggaaaacgatgacgcctacattggcatcacctacaagaaccag
ggcaagctaaaggacagggaaagtggcttcgacgagcagcggctgagctctgacagcggc
tacattattcccctccctgaccttgaccctatatctgatgatgaatatggaaagagaaac
agacacagctctcagacatccgaggagagtgccatcgagacgggctccagcagctccact
tttgctaagcgtgagggtgagaccctggaggacatcacgctgctggacgagatgtgtctg
gactgtagcgacttggtagaggacagctttctgtga
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