Lates calcarifer (barramundi perch): 108879218
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Entry
108879218 CDS
T04895
Name
(RefSeq) uncharacterized protein LOC108879218
KO
K06745
programmed cell death 1 ligand 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108879218
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
lcf04090
]
108879218
CD molecules [BR:
lcf04090
]
Proteins
108879218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
V-set
C2-set_3
NACHT
Ig_2
ig
AAA_22
C2-set_2
AAA_16
AAA_18
nSTAND3
AAA
AAA_30
Rad17
C1-set
NPHP3_N
AAA_11
ABC_tran
RuvB_N
NB-ARC
DEAD
AAA_33
AAA_25
C2-set
AAA_17
DUF2678
Mg_chelatase
Ig_CD22
AAA_5
AAA_19
TsaE
AAA_29
Syndecan
RIFIN
Motif
Other DBs
NCBI-GeneID:
108879218
NCBI-ProteinID:
XP_018525925
UniProt:
A0A4W6C6Y9
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Position
LG9:9233915..9243105
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AA seq
507 aa
AA seq
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MDWALFVILQVIFQPSLSVLFTVEAERPTYTSEFGGDVVMGCRFQPKPSNPQADLKVSWR
WLGSTSPWEVYQMNNGKEHSASPEYQGRVRLLTEQLNEGWAKLQVSRLRINDSGVYQCLV
QTGEGADYKAITLSVIAPYKTLTKRIVKAAEGDKVLLTCQSEGYPESPVVWQDGRLQSLK
SNTTTVSTPEQLFKVTSQIHVNSSDKDNYTCHFLNGGQSATFHIPDEIPVPQVKNDALIV
VLSIGLIMVVIIVAVLMYRRRKGSNTPSTRNLLVDGRGGPVSAVACSQTDKENEEERTIF
NEERIEENLGAILKAHYSDVSFSTEVRHHSGSFDVEELPHRLQNNEGQAMKPQALLPEAG
EILLLQGPPGSGKTTVAHILVSSWVEGPAHSLANVLDLSILRLLLYIDCSAAKGDLFQEV
VTQLSLMEKTSTEDELRTLLTRSSDTLLLLDGYREGNQFFDESLKRFLCERGGCRVLVVT
CPEHCPTLKETIGTRGVLKLQTQTVKY
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggactgggccctttttgtaatattgcaagtcatatttcagccatctctctcagtctta
ttcactgttgaggcagagagacccacgtacacgtcagagttcggtggcgatgtcgtgatg
ggctgcaggtttcagccaaaaccgtcaaatcctcaagctgacctgaaggtgtcctggcgc
tggctcggcagcacctccccctgggaagtgtaccagatgaataatgggaaggagcactcg
gcgtctccggagtatcagggcagagtgaggcttctcactgagcagctgaatgagggctgg
gccaagctacaggtctccaggctgaggatcaatgactctggggtttatcagtgtctggtg
cagacaggagaaggagctgactataaagccataactttgtctgttatagcaccttataaa
acactgactaaacgcattgtgaaagcagcagaaggggataaagtgctgctaacctgccaa
tctgagggataccccgagtcacctgttgtgtggcaggatggacgcctgcagagcctcaag
tccaacaccactactgtgtcaacaccagaacaactttttaaagtcaccagtcagatacat
gtcaactcttcagataaagacaactacacatgtcactttttaaatggtggccaatctgca
acattccatattccagatgaaatacctgttccacaggtgaaaaatgatgccctcatcgtt
gtgctgagcataggactgataatggttgtcattatcgtcgcagtgctcatgtatcgacga
cgaaaaggatccaacactcccagcaccaggaaccttctggttgacggtcggggcgggcct
gtttctgccgttgcctgctcacaaacagataaagaaaatgaggaagagagaactattttt
aatgaagagcgcatagaggaaaatctgggggcgattctgaaagcccattattctgacgtc
tccttcagcacagaggtgaggcatcactcgggctctttcgacgtggaagagctgcctcac
aggctgcaaaacaatgagggccaggctatgaaacctcaagctttactcccagaagctgga
gagatacttttacttcagggacccccaggaagcggaaagacaactgtagcccacatcctg
gtctcctcttgggtcgaagggcccgcacattccctcgctaatgtcctagatctcagcatt
cttcggcttctcttgtacatcgactgcagcgctgcaaagggtgacttgtttcaggaagta
gtgactcaactttctctcatggaaaagacatcgacagaggatgagctgaggactttgtta
accaggtccagcgacactctgctgttgctggatgggtacagagaggggaaccagtttttt
gatgagtccctaaaaaggttcctatgcgaaagagggggatgcagggtgctggttgtgacc
tgcccggagcattgcccaacactcaaggagacaattgggacaagaggggtactgaagctc
caaacacagactgttaaatactga
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