Lates calcarifer (barramundi perch): 108879399
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Entry
108879399 CDS
T04895
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04142
Lysosome
lcf04144
Endocytosis
lcf05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108879399
04142 Lysosome
108879399
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
108879399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108879399
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108879399
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
108879399
Exosome [BR:
lcf04147
]
Exosomal proteins
Proteins found in most exosomes
108879399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
108879399
NCBI-ProteinID:
XP_018526165
UniProt:
A0A4W6G0B5
LinkDB
All DBs
Position
LG21:5437617..5461378
Genome browser
AA seq
1684 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNN
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQDE
EPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPMEGPLQTRLLEMNLVHAPQVADAIL
GNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLTTQSLTELFESFKSFEGLFYFLGSIVN
FSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNSLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLIMVVRGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYY
DSRVVGKYCEKRDPHLACVAYERGQCDQELIHVCNENSLFKSLSRYLVRRKNPELWASVL
LETNNYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYMEV
GQAAAQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDDKMYEAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN
HPADAWKEGQFKDIVTKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHTRAVNFFS
KVKQLPLVKPYLRSVQNHNNKSVNEALNNLFIIEEDYAALRTSIDAYDNFDNISLAQGLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDTELAEELLAWFLKE
DKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDAIKEKVDKL
EASESLRKQEEQATESQPIVYGTPQLMLTAGPNVAVPPQQAYGYGYTGAPGYAQPPQPSF
GYGM
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatcctgcctatccgcttccaggagcacctgcagctccagaacctgggaatc
aacccagccaacatcggattcagcactctgaccatggagtccgacaagttcatctgcata
agggagaaagtgggtgagcaggcccaggttgtcatcatagatatggccgatcccaacaat
cccatccgccggcccatctctgcagacagcgccatcatgaaccctgccagcaaagtcatt
gcccttaaagcggcaaagaccctgcagatcttcaacattgagatgaagagcaagatgaag
gctcacacgatgacagatgacgtgaccttctggaaatggatctccctcaacaccgttgcc
ctggtcacagacaacgccgtctaccattggagcatggagggtgattctcagccaatcaaa
gtctttgatcgtcactccagcctggcaggctgccagatcatcaactaccgcaccgacgcc
aaacagaagtggctgctgctcattggcatttcagcacagcaaaatcgtgttgtcggagcc
atgcagctgtattcagtggacagaaaagtgtctcagcccatcgaggggcacgccgctggc
tttgcacagttcaagatggagggcaacactgaagagtcaactctgttctgttttgcggta
cgaggacaggcaggaggaaagctgcatatcattgaagtggggactccaccaaccgggaac
cagccatttccaaagaaagctgttgatgttttctttcctccagaagctcagaatgacttc
cctgtagccatgcagatcagttcaaagcaagatgtggtctttctcatcaccaagtacggc
tacatccacctgtatgacctggagactggtacttgtatctacatgaacaggatcagtgga
gagaccatttttgtcactgccccccatgagccaactgctggtataattggagtcaacagg
aaaggacaggtgttgtccgtgtgtgtggaggaggaaaacatcattccctacatcactaat
gtgctccagaacccagacctggctcttcgcatggctgtccgcaacaacctcgctggtgct
gaagagctgttcgcccgcaagttcaacaccctcttcgcagcagggaattactcagaagct
gccaaggtggcagccaatgcacccaagggtatcctgcgaaccccagacaccatccgtcgg
ttccagagcgttccagctcaaccaggccagacgtctcccttgctccagtactttggcatc
ttgctggaccaaggccagcttaataagtttgagtctctggagttgtgcaggcctgtcctc
cagcagggccgcaagcagctactagagaaatggctgaaagaggacaagctggagtgctct
gaggagcttggagatttggtgaagtctgtagatcccactcttgccctcagtgtctacctc
agagccaacgtccccaataaggtcattcagtgcttcgcagagactggccagttccagaag
attgtcctctatgccaagaaggtcggctacactccagactggatcttcctgctgaggaac
gtaatgcggatcagtccagaacagggcctccagttctcccagatgctggtccaggatgag
gagccacttgcagacattacacaaatcgttgatgtgttcatggagtacaacctgatccag
cagtgcacatccttcctactagatgccctgaagaacaacagacccatggaaggaccactg
cagacacgcctgctggaaatgaatctggtccatgcaccacaggttgcagacgccatcctg
ggcaaccagatgttcacccactacgatcgtgctcatgtggcacagttgtgtgagaaggcc
ggtctcctgcagagggcactggaacattatactgatctgtatgacattaagcgtgctgtt
gtgcacacacaccttctcaatcctgagtggctggtgaatttctttggctccttgtcagtg
gaggactctctggagtgtctgagggccatgctttctgcaaacatccgtcagaacctgcag
atctgtgtgcaggtggcctccaagtaccatgagcagctcactactcagtccctcactgaa
cttttcgagtccttcaagagcttcgagggtttgttctacttcttgggttccattgtgaac
ttcagccaggatccagaggtccacttcaaatatatccaggccgcctgcaagacgggccag
atcaaagaggtggagagaatctgcagagagagcaactgctacgaccctgaacgtgtgaag
aacttcctcaaggaagccaagctgactgaccagctgcctttgattattgtgtgtgaccgc
tttgattttgtccatgacctggtcctgtacctgtaccgcaacagcctgcagaaatacatt
gagatctacgtgcagaaggtgaatccgagccgtctgcctgtagtcattggaggtttactg
gatgtagactgtgctgaggatgtgattaagaacctgatcatggtggtgagaggacagttc
tccacagatgaactggtcgctgaagtggagaaaagaaatcgactgaagctgctgctgcct
tggctggaggctcgtattcatgaaggctgcgaggagcctgctacccacaatgctctggcc
aagatctacatcgacagcaacaacaacccagagcgcttcttgagggagaacccatactat
gacagccgtgtggtggggaagtactgtgagaagagagacccccacctggcctgtgtggcc
tatgaaagaggacagtgtgaccaggagctgattcatgtgtgcaatgagaactcactgttc
aagagtctgtcccgctaccttgtacgtcgcaagaaccctgagctgtgggcgagcgtgctg
ctggagaccaacaactacagaagaccactcattgaccaggttgtccagacagctttgtca
gagacccaggatccagaggaggtgtctgtcacagtcaaggccttcatgaccgctgacctt
cccaatgagctcatcgagcttctggagaagattgtcctggacaactctgtcttcagcgag
cacagaaacctccagaatctgctcatcctgacagccattaaagctgataggacacgtgtc
atggagtacatcaaccgtctggacaactacgatgccccagacattgctaacatcgccatc
agcaatgagctgtttgaggaggcctttgctatttttaggaaatttgatgtcaacacctca
gctgtgcaggttctgattgagcacatcggtaacctggacagagcttatgagtttgctgag
cgctgcaatgagccaccagtgtggagtcagctggcaaaggcccagcttcagaagggcctt
gtcaaagaagccatcgactcttacatcaaggctgatgacccctctgcttacatggaggtg
ggacaagctgcagctcaaagtggaaactgggaggatctggtgaagtttctgcagatggcc
cgcaagaaggctcgcgagtcatacgtcgaaacagagttgatctttgccctggccaagacc
aaccgcctggctgagctggaagagttcatcaacgggcccaataatgctcacattcagcaa
gtgggtgaccgctgctatgacgacaagatgtacgaagcagccaaactgctttacaacaac
gtgtccaactttggccgtctggcctccactctggtccacctgggagagtaccaggcagct
gtggacggagcccgcaaggccaacagcacccgcacctggaaggaggtgtgtttcgcgtgt
gtagatgggaaggagttccgtcttgcccagatgtgtggcctgcatattgtcgttcatgcc
gatgaactggaagaactcatcaactactaccaggaccgtggttactttgaggagctgatc
accatgctggaggctgctctcgggctggagcgtgcacacatgggtatgttcaccgagctg
gccatcctctactccaaattcaagccccagaagatgagggagcacctggagctcttctgg
tcccgtgtcaacattccaaaggttctcagggcagcagagcaggctcacctctgggcggag
ctggtgttcctctatgacaagtacgaggagtatgacaacgccatcatcaccatgatgaac
cacccagctgatgcctggaaggagggccagttcaaagacattgtcactaaggtggccaat
gtggagctgtactacaaagccatccagttttatctggagttcaaaccattgttactgaac
gacctgctcatcgtcctttctccaagactggaccacacacgcgctgtcaacttcttcagc
aaggtgaagcagctgcctctggtgaaaccttacctaaggtctgttcagaatcacaacaac
aagtcagtgaatgaggcactcaacaatctcttcatcattgaggaagactatgcggcactg
cgtacctccattgatgcctatgacaactttgacaacatctcgctggcccagggcctggag
aaacacgagctaattgagtttaggaggattgctgcttaccttttcaagggcaacaaccgt
tggaaacagagtgttgagctctgcaagaaggacaagctctataaggatgccatgcagtat
gcatcagagtccaaagacacagagctggcagaggagctcctggcttggttcctgaaggaa
gacaagaaggagtgttttgccgcctgcctattcacctgttacgacctgctgcggcctgat
gtggtgctggagaccgcctggcgacacaacatcatggacttctccatgccatacttcatc
caggtcatgagggagtatctgtctaaggttgatgcgataaaggaaaaggtggacaaactc
gaagcctccgagtctctgaggaaacaggaggagcaggctacagagtctcaacccattgtt
tacggcacaccccagctcatgctcacagcagggcccaacgtggccgtgcctccccagcag
gcctacggctacggctacacaggagcaccaggttacgcccagccgccacagcccagcttt
ggttacggcatgtga
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integrated database retrieval system
