Lates calcarifer (barramundi perch): 108879586
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Entry
108879586 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: Hermansky-Pudlak syndrome 3 protein
KO
K20190
Hermansky-Pudlak syndrome 3 protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108879586
Membrane trafficking [BR:
lcf04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
108879586
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HPS3_C
HPS3_N
Pepco
Motif
Other DBs
NCBI-GeneID:
108879586
NCBI-ProteinID:
XP_050933149
UniProt:
A0AAJ8DW82
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Position
LG17:complement(23637637..23650287)
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AA seq
1089 aa
AA seq
DB search
MNSPRHRANMVHVYNCHPFASQQIVQVEQEPGLVCCGGGALFVVATGGCKVEAYSLEQEG
CPLICRFATMGTVRSVQHSKIGDYLVTIEEKNSATYLRAYTNWRYQAEEKARVGVRLLGH
LLRGASVRGGVQMEIIEIPLSERPVAMACCSVTGDLLVGCENTLVLFTLRRQNQQNLQNQ
SQQNIQSPWPNTQQSSSQSQGQTSTSNQNFSVLDFERSVIMHLPKITPKQVALCGGYVAV
QAELEVLVLKLDASSEPKTMDKSLDTSKSADHLEDQSDFLLIPRHQELLGDRAKDCDIPV
SIEKTGLEDKGQYTLSYVLFRRFTPEFFQGCSVEETQLHSLQLYPLFTSNQSVSMDEPAC
MFCFFSLPNAGYLYSLKGGVELLSAYQYPEKVLEAVLTDHLLHVITRNALQCFTVRCAAV
AARIEDPYIDTTMRACPPCSLEVCALRMQLFIGLRSVCVYGRHVILLSTADTETSEETER
TTQRRGLELKEHTMLTGIFLAVGIDPATTPALESLLSRPFLSRKWTISSPKETSAAGHGW
NLYVVDTVSPFTLYQEMVEYSQHYAETSPQAQSLRHLLSEAHLLLRASLLQTSEQQQHSE
GDPTPSQQKDTDRQPERQTALQTDRQELEEALRQNCAQLGDCFSRASQKDCHLALPYYRM
SGLSVTEVMVRNRPHPSSPHSYGPGFLFYLKHYLLEETEQTLNQESADEVIDIFGQSDPS
ELITVCASPSMINVSPARTLQILQRLEDTAGVSVPLTITMATMMLRLDDLPQYTQLINRH
AEMLLVYGFIEEPRLLLHGGGQHAHVRPTALAHQLAKLQPGLLVAAMVALHENNKVQLEQ
ADHVFKELGCENCLQVDFWEAMLMASSQEAVIQELLFRLASVYIDQLTYTNSDTHSSVLH
APQRRRSLKSADDLINSCSHYGALYPWLTVLSPAYSTSFQHQESLHKLQSLLCGPSLSIG
SVLPLLERLSEETLWGFSLHLLCATRRGQYDSSIEKLLDRCPQAIIAYANHQLQDKNMAL
WWQKLLPELCNRTRAAAENSILLAALKETLVVVAMETSPTDFLELIPDDGTAAYFLPHLL
TCSQRHLLT
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgaactctccaagacacagagcaaacatggtccacgtgtacaactgccatccattcgcc
tcacagcagatagttcaggtggagcaggagcctggactggtttgttgtggaggtggagcc
ttgttcgtggtggctactggaggatgcaaggtggaggcgtacagtctggagcaggagggc
tgccctctcatctgtcgctttgccacaatgggaactgtgaggagcgtccagcacagcaag
ataggagattacctggtgaccattgaggaaaagaatagcgccacctacctgagagcctac
accaactggcgataccaggccgaagaaaaagcccgtgttggggtgcgtttgttgggccac
ttgctacgtggggcatctgtacggggcggagtgcagatggagatcattgagatccctctg
tctgagcgtcctgttgccatggcttgttgctcagtaacaggagacctgctggtcggctgc
gagaacactctggttctgtttactttgaggaggcagaaccagcagaacctgcagaatcag
agtcaacagaacattcagagcccttggccgaacactcagcaaagctccagtcagagtcaa
ggtcaaacctcaacttcgaaccagaatttttcagtcctggactttgaacgctcagtcatc
atgcaccttccaaaaatcacacctaaacaggtggcgctgtgtgggggatatgttgcagtg
caggcagagctggaggtgctagtactgaaactggatgcatcgtctgaacccaaaaccatg
gacaaatcactggacacaagtaaaagtgcagatcatctggaagaccagagtgactttctg
ctcatcccgaggcaccaagagttgcttggcgatcgagctaaagactgtgacatccctgtc
agcatcgaaaagaccgggctggaggacaaaggacaatacacgctatcatatgttcttttc
aggcgttttactcccgagttcttccagggctgcagtgtggaggagacacagctccactct
ctgcagctctacccacttttcaccagtaatcagtcagtgtctatggatgaaccagcgtgt
atgttctgcttcttctccctccccaacgccggctacctgtacagcctgaaaggtggagtc
gagctgctttcagcctatcagtatccagagaaggtcctggaggcggtgctaaccgaccac
ctgttgcatgtcataacgaggaatgcattacagtgtttcacagtacgctgtgcagcagta
gcagcaaggattgaagacccctacatcgataccaccatgagggcctgtccaccctgcagc
ctcgaggtgtgtgcgctcaggatgcagctgtttattggtctgcgctcagtgtgtgtctat
ggtcgccatgttatcctgctctccaccgctgacacggagacatcagaggagaccgaacgc
accacgcagcgcaggggcctcgagttgaaagaacacaccatgctgactggtattttcctg
gcggtgggaatcgatcccgcaaccacgccagctctggagagccttctatcacgccccttc
ctgagcaggaagtggacaatctcctctcccaaagaaaccagtgcagcaggacatggatgg
aatctgtatgtggtcgacaccgtctcccccttcactctgtaccaagagatggttgaatac
agtcagcactatgcagagaccagcccacaggcccaaagccttcgacacctcctcagtgaa
gctcacctcctcctccgtgcctctttgctccaaacatcagagcagcaacagcacagtgag
ggcgaccccacaccatctcagcagaaagatacagacagacaacctgagagacagacagct
ctacagacagacagacaagaactggaagaggcactcaggcagaactgtgcacagctggga
gactgtttcagcagggcgagtcaaaaggactgccacctggctttaccatactacaggatg
tctggtctgtcagtcacagaggtcatggtcaggaaccgcccacatcccagcagccctcac
tcatacggccccggtttcctgttttacctgaaacattacctgttagaggaaacagagcag
accctcaatcaggaatcagctgatgaggtcatagacatttttggccaatcagatccctca
gagcttatcactgtatgtgccagcccgtccatgataaatgtcagtcctgcccggacgctg
caaattctacagcgtctggaggacacagctggtgtgtctgttccactgacaatcaccatg
gcaaccatgatgctgcgtttggacgacctgccacagtacactcagttaataaacagacat
gcagagatgctgctggtgtatggtttcatcgaggagcccaggcttctgcttcatggtggg
ggtcagcacgcacacgtccgtcccacagcgttggctcatcagctggctaagttacagcca
gggctgctggtggccgccatggtggctcttcatgagaacaacaaagttcagctagaacag
gccgatcatgttttcaaggaactaggctgtgagaactgcttacaggtggatttctgggag
gcgatgctcatggcctcttcacaggaagctgtcatccaggagcttctgttcagactggct
tctgtctacattgatcaattgacctacacaaactcagatacacactccagcgttcttcac
gcacctcaaagacgcaggtcgctgaagagtgctgatgatctgatcaactcatgctcccat
tatggtgctctgtacccgtggctcactgttctcagtccagcttacagtaccagcttccaa
catcaggagtcgttacacaaactgcagtctcttctatgcggtccttccttgtctattggt
tctgtcctgcccctgttagagcgtctgtcagaggaaactttgtggggtttcagcctgcac
ctgctctgtgccaccagaagagggcagtatgacagcagcattgagaagttgctggataga
tgtcctcaagccatcatagcctacgccaatcaccagttacaggacaaaaacatggcatta
tggtggcagaagctgctcccggagctttgtaatcggacgagagcagctgcagaaaacagc
atcctattggccgctcttaaagaaacactggtggtagttgccatggagacaagccccaca
gacttcctggagcttatacctgacgatggcacggctgcttacttcctgcctcacctgctg
acatgtagccagagacacctgctaacctga
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