Lates calcarifer (barramundi perch): 108879656
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Entry
108879656 CDS
T04895
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 1
KO
K05034
solute carrier family 6 (neurotransmitter transporter, GABA) member 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
108879656
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108879656
Transporters [BR:
lcf02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
108879656
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GFIT
Motif
Pfam:
SNF
RhodobacterPufX
Motif
Other DBs
NCBI-GeneID:
108879656
NCBI-ProteinID:
XP_018526531
UniProt:
A0A4W6C307
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Position
LG18:complement(7083044..7096255)
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AA seq
597 aa
AA seq
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MGKTGQSTVDLNSPSEVKQAIPFEELDAVVPPADEKKKKEEPPDRGSWKGKFDFLLSCVG
YAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLVFAGIPLFFLETSLGQFTSVGGLGVWKLI
PMMKGVGLAAVVLSFWLNIYYIIIIAWALYYLFNSFGSELPWQSCDNPWNTEKCFSNYSL
TDTTNLTSAVTEFWERNMHQLSSGLEEPGELRWPLVGTLALAWVLVYFSIWKGVEWTGKV
VYFSATYPYFMLFILFFRGVTLPGATDGILFYITPDFNKLIRSEVWLDAATQIFFSYGLG
LGSLIALGSYNTYNNDVYRDSIIVCCINSCTSMFAGFVIFSIVGFMSYITKKPVQELAAS
GPGLAFLAYPQAVTQLPMSSLWAILFFSMLMMLGLDSQFCTVEGFITALMDEYPLVLRKR
KKVFILIVCFISFIIGFSNITQGGLYVFKLFDYYSASGMCLLFLVFFETVSISWLYGAER
FYKNIEDMIGYRPCAWWKLCWMFFTPLICLGVFTFSAIEMTPLTLGKYVYPLWGQVTGWF
MALSSMILIPGYVIYMFCTTKGSIKQRWRRMTTSQEDEKPSGHEEFTHTGSVGEAPV
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagactgggcagagtacagtggacttgaactccccgtcagaggtcaaacaagcc
attccctttgaggaactggatgcggtggtgccccctgcagacgaaaagaagaaaaaagag
gagccacctgacaggggaagctggaagggcaagtttgactttctgctgtcgtgcgtggga
tacgccatcgggttaggaaatgtctggaggttcccctatctgtgtggcaagaatggagga
ggggccttcctgatcccatactttttgactctggtgtttgctgggatacctctctttttc
ctggaaacatctctgggacagttcacctcagtgggagggctaggagtatggaaactcatc
cctatgatgaaaggtgttggtctggctgcagtggtgctgtccttctggctcaacatctac
tacattatcatcatcgcctgggcactctactatttattcaactcctttggttcggagctt
ccttggcaaagctgtgataacccctggaacacagagaaatgtttttccaactacagtctg
acagacaccaccaacttgaccagtgctgtcactgagttctgggagcgtaacatgcaccag
ctgtccagtggtctggaggagccaggagagctacgctggcccttagtgggcactctggct
ctggcgtgggtccttgtctacttctcaatctggaaaggagtggagtggacggggaaggtg
gtgtatttctcagccacctatccctacttcatgctgttcatcctgttcttccgaggggtc
actctgcccggagccacagacgggatcctcttctacattactccagatttcaataaactc
attcgttctgaggtgtggctagatgcagcaactcaaatcttcttttcctacggtctgggc
ctaggctcgctcatcgcactggggagctacaacacttacaacaatgatgtttacagggac
tccatcatagtgtgctgcatcaactcctgcacaagcatgtttgctggcttcgtcatcttt
tccatcgtaggcttcatgtcctacatcactaagaaacctgtgcaagaattagcagcatca
ggtccaggtctggcttttttagcctatcctcaggctgtcacccagctgcccatgtcctct
ctatgggccatcctcttcttctcaatgctcatgatgctgggcctggacagtcagttctgc
acagtggaaggcttcatcacagctctgatggatgaatatcctctggtgctgaggaagagg
aagaaggtcttcatcctcatcgtctgcttcatctccttcatcatcggcttctccaacatc
acacagggtggtctgtacgtgttcaagctgtttgattactactccgccagtgggatgtgt
ctcctcttcctcgtcttcttcgaaaccgtttccatatcttggctttatggagctgaaagg
ttttataagaacattgaagacatgatcggctatcggccatgtgcctggtggaaactctgc
tggatgttcttcacaccactgatctgcctgggggtgtttaccttcagtgccatcgagatg
acccctctgaccttggggaagtacgtgtaccccctatggggccaagtgactggctggttc
atggctttgtcttctatgatcctgatcccgggctatgtcatctacatgttttgcaccacc
aaaggcagcatcaaacagcgctggcggaggatgacaacctcccaggaggatgaaaagcca
tcggggcatgaagaatttacacacacagggagcgtgggtgaagctccggtctag
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