Lates calcarifer (barramundi perch): 108879862
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Entry
108879862 CDS
T04895
Symbol
pdlim5b
Name
(RefSeq) PDZ and LIM domain protein 5b isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108879862 (pdlim5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
108879862 (pdlim5b)
Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
108879862 (pdlim5b)
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GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PDZ_2
Motif
Other DBs
NCBI-GeneID:
108879862
NCBI-ProteinID:
XP_018526808
UniProt:
A0A4W6D1T5
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Position
LG9:10673322..10709938
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AA seq
611 aa
AA seq
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MSSSYSVSLAGPAPWGFRLQGGKDFCLPLTISRLTDGGKAVQAKMCVGDIILSINGISTD
SMNHLEAQNKIKACTDSLNLTLQRPSNAPKGGVPKDEPQEIIKPVPITHSAPSTTYTKPS
SHPSPAFNKTPRPFGGDSSASSSPAAPKVASIPSESSAFTPAAPSQPPQPPFPLRSSLPA
SDSAPANSVPRPSPARSTFTSPSASSSSSNSSSPARVTAPSSNPTVPQPSVYNTPINLYS
NVNACEVAMGQRRGLLESQGLSENLNGKPVVEAENHASPLSDASKKRLIEDTEDWHPRTG
TSQSRSFRILAQLTGTENEQVPENSGKNEPVDKTAPVVHTSPAAKTFSKSAPAPRNGNVV
PASTFKSPAAQNKPSFQPSGPSGFPKGGAVPSFGKVTNPAPKGPDRPTPQPHPEDLNSLV
QRAEHIPAGTRTPMCNKCNNVIRGPFLVAMGMSWHPEEFNCAHCHSSLADRGFVEERGQV
YCERCYEQFFAPTCARCNQKVLGEVMNALKQTWHVSCFVCTACQHPIRGNTFHMEDGRPY
CEKDYYNLFGTNCHGCDFPIEAGDKFLEALGFTWHDTCFVCAVCSTNLEGQPFFSKKDKP
LCKKHAHTVNI
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcagctacagtgtctccctggctggtcctgccccctggggcttcagactgcaa
ggagggaaggacttctgtctgcccctcaccatctcacggctgactgatggaggcaaggca
gtccaagccaagatgtgtgtcggagacattattctttccattaatggcatttccacagac
agcatgaatcacctagaggcccagaacaagattaaggcctgcacagacagtctcaacctc
actctacagagaccctccaatgcccctaaaggtggagtgcctaaggacgagcctcaagaa
atcattaagcctgtcccaatcactcactctgccccaagcaccacatacaccaagccatca
agtcatcccagtcctgctttcaacaagacacctcggccgtttgggggggacagcagtgct
tcctcctccccggctgcccccaaagtagcctccattccctctgaatcatctgctttcacg
ccagctgccccctctcagccaccacaacctccgtttccgctgagatccagcctccctgcc
tcagactcagctccggccaactcagttcccaggcccagccctgctcgctccaccttcacc
tccccatctgcctcttcctcctcatctaactcctcctccccagccagagtgacagccccc
tcttccaatcccactgtcccgcagccctctgtttataacacacctatcaacctctactct
aatgtcaatgcttgtgaggtggctatgggacagagacgaggtcttttggaaagccagggt
ctgtcagagaacctcaatgggaaacctgttgtagaagctgagaatcatgcgtccccactg
agtgatgccagcaagaagcgtctgattgaggacaccgaagactggcacccacgaacgggc
acctcccagtcccgctccttccgtatcttggcccagctcaccggcactgaaaatgagcaa
gttccagagaacagtggaaagaatgagccggttgacaaaaccgctcccgtggttcacacg
tcgcccgctgcaaaaacattttccaagtctgcaccagcacccaggaatggcaacgttgtc
cctgcttccacattcaagagccctgcggcccagaacaagccctccttccagcctagcggt
ccatcaggttttcctaagggtggagcagttccttcatttggcaaagttaccaatcctgct
cccaaaggtccagaccgccccaccccacagccacatccagaggacctcaactctctggtg
cagcgggctgagcacataccggctggtacacggaccccaatgtgcaacaaatgcaacaat
gtcatcaggggcccgttccttgtggccatgggcatgtcatggcaccctgaggaattcaac
tgcgctcattgccactcctccctggcagaccgtggatttgtggaggagaggggccaggtg
tactgtgaacgctgctacgagcagttcttcgctcccacctgcgcccgctgcaaccagaag
gttcttggggaagtcatgaatgccctgaaacagacctggcatgtgtcctgtttcgtctgc
actgcctgccaacatccaatcagaggcaacacgtttcacatggaggatggtcggccgtac
tgtgaaaaagactactacaacctgtttgggaccaactgccatggctgtgacttccccatc
gaagcaggggacaagttcctggaggctctaggattcacctggcatgacacctgctttgtg
tgcgcggtttgctccactaacctggaaggtcagccattcttctccaaaaaagacaagcct
ttgtgcaagaaacatgctcacactgtcaacatctga
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