Lates calcarifer (barramundi perch): 108879904
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Entry
108879904 CDS
T04895
Name
(RefSeq) sterol regulatory element-binding protein 1
KO
K07197
sterol regulatory element-binding transcription factor 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
108879904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108879904
04131 Membrane trafficking [BR:
lcf04131
]
108879904
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
Ubiquitous bHLH-ZIP factors
108879904
Membrane trafficking [BR:
lcf04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
108879904
Autophagy
Mitophagy
Other mitophagy associated proteins
108879904
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HLH
bHLH_IRO3
ZapB
Motif
Other DBs
NCBI-GeneID:
108879904
NCBI-ProteinID:
XP_018526869
UniProt:
A0A4W6DW06
LinkDB
All DBs
Position
LG11:11691762..11706607
Genome browser
AA seq
1190 aa
AA seq
DB search
MNSLSFDDPSLDNLDPTLSLNDPSDIDTALLSDIDDMLQLINNQDMEFGGLFDNPPYTGP
PPTQELPGLTQSITSAAPPATTTTPSPSSSSSILSSSPHLDALLGPPITRSSSTPDKAFQ
PPTFQQSPLAQVPSSTPRQQPASPQQAQTLRQPQVEQPQPILSPTAPAQAASPHGSPGPS
PVFSSTPQALFTSPAPQTPLQPQPQPQTQTQLQAQAQPQQARTNYSNQNNYTAGSPGNVS
QPATSLPSSPPSVQPVAIQTQLQGLTTTSSLLATSASPPVQTIAPHVQQVPVLLQPQFIK
AESLLLTTLKHDPCMVTTVASPTSLATTTTPVQSTSLQAFMGGGTILTTVPVMVDTEKLP
INRIAISSKPAGQPHKGEKRTAHNAIEKRYRSSINDKIVELKDLVAGTEAKLNKSAVLRK
AIDYIRYLQQANQKLKQENMALKMAAQKNKSLKDLVAMEVDGQSDVKNELPTPPASDVGS
PTSFSHCGSDSEPDSPMGEDTKPNVGMLDGSAAGGSAGGMLDRSRMALCAFTFLFLSLNP
LAALLCSSGSSSAGSTAATTTHHAGRSVLGVHIAADSWGWMDWMLPTILVWLLNGILVSG
VLIRLLVYGEPVTRPHSGSSVLFWRHRKQADLDLARGDFAQASQNLWTCLKALGRPLPTS
QLDLACAALWSLLRFCLQRLWVGRWLAARAGGLRSDRPLQEDACKSSRDAALVYHRLHQL
HMTGKLNGSHLSAVHMALSAVNLAECSGSCLPVATLAEVYVSAALRVKASLPRILHFTSR
VFLSSARQACLSSSGSVPPAMQWLCHPLGHRFFVDGDWAIRSTPKESIYSQAGNTVDPLA
QVTQAFREHLLEKALYCVAQPHGEKSSSQGEGEYADALEYLQLLISASDAAGATSQSFAI
GSNMATVTGCDPHSKWWSSVAVVIINWLQGDDAAAERLYPTVEHLPRSLQNAESLLPKAC
LNTFRAVRALLSKPENCQLSLSYSDKASALLRDSLNLGPHCHSSSLDKVIQLLLCDLLLV
MRTNVWRLQQQGAGPAGSGLVGTSGPAGVHQASPPELQGFQQDLSSLRKLAHSFRPAMRR
LFLHEATARLMAGASPTRTHQLLDRSLRRRATPGAKTEECETRPGQREQAEAVMLACRYL
PPSFLSAPGQRVGMLADAARTLEKLGDKRTLHDCQQMIIKLGSGTTVTNS
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcctatcctttgacgatccctcgttggataatctggatcctacactgtcgcta
aatgaccccagcgatattgacacggctctcttaagcgacattgatgatatgttacagctc
atcaacaaccaggacatggagtttggaggactctttgataaccctccatacacagggccc
cctcccacccaagagcttcctggtttgacccagtctatcacctcagctgcccctccagcc
accaccaccacaccctcaccttcatcctcctcttccatcctaagcagtagcccccacctg
gatgcgctcctgggaccccccatcacccgcagctcttccactccagacaaggccttccag
cctcccactttccagcagtcccccttggcccaggtacccagctccaccccacggcagcag
ccagcctccccgcagcaggctcagaccctcagacagcctcaggtggaacagccccaaccc
attctcagcccaactgcaccggcccaggcagcttcacctcatggctcaccgggaccgagc
ccggtgttcagctccacgccacaggctctcttcacctcgcctgcaccccagactccactt
cagccccagccacagccacagacacagacacaacttcaggcccaggctcagccccaacaa
gcccggaccaactacagcaaccagaacaactacacagctggcagccccggcaacgtgagc
caacccgccaccagtttgccatcctcacctccaagtgttcagccagtggccatccagact
cagctccaagggctgaccaccacctcctctctgctggccacgtcagcaagcccacctgtt
caaaccatcgcgccccatgtgcagcaagtacccgtgctgctgcagccccagttcatcaag
gctgagtctctgctgctgaccactctcaagcatgacccctgcatggtcaccactgtggcc
tctcccacatccctggccacaaccaccaccccagtacagagcacttcactgcaggctttc
atgggcggtggcaccatcctgaccacggtgccggtcatggtggacactgagaagctgcct
atcaaccgcattgccatcagcagtaagccggccggccagccccacaagggtgagaaacgc
actgctcacaacgccatcgagaagcgctaccgctcttccatcaatgacaaaatcgtggag
ctcaaagacctggtggctggtactgaggccaagctcaacaagtctgcagtgctgagaaaa
gccattgactacatccgttacctgcagcaggctaatcagaaactcaaacaggagaacatg
gctcttaaaatggcagctcagaaaaacaagtcgctcaaggacctggttgccatggaggta
gatggacagtctgatgtgaagaacgagctgcccacccccccagcttcagatgtgggctcc
ccgacttctttctcacactgtggcagtgactcagagcccgacagcccgatgggggaagac
acaaagccgaatgtgggcatgttggacggatcggcagcaggcggtagtgctggcggcatg
ttagaccgttcccgcatggcgctgtgcgccttcaccttccttttcctctctctcaaccct
ctggcagctctgctgtgttcatctggcagcagctcagctggaagcaccgcagccaccacc
acccatcacgcaggcaggagcgttctgggtgtgcatattgctgcggactcatggggctgg
atggactggatgctaccaactatacttgtatggctactcaatggtattctggtgtctgga
gttctgatccgtctcttggtgtatggagaacctgtaaccagaccacactctggatcctct
gttctgttctggaggcaccgcaagcaggctgacctggacctggctagaggggattttgct
caggctagtcagaacctgtggacctgtcttaaggctctcggtcgtcccttacccacctct
cagttggacctggcttgtgctgctttgtggtctctgctaagattctgcctccagcgcctc
tgggtgggccgctggctggctgccagagctggagggctgcgatccgaccgccccctgcag
gaagatgcctgcaagagcagccgtgatgctgccctagtttaccaccgcctgcaccagctt
catatgacaggtaaattgaatggtagccacctgtccgcagtgcacatggctttaagtgca
gtgaacctggcagagtgttctggctcctgtctgcctgtagccactctggctgaggtctac
gtctctgcagctctacgggtcaaagccagcctgccaaggatcctccatttcacctctcgt
gtgttcctgagcagtgcccggcaggcgtgcctatcctccagtggcagcgtacctccagcc
atgcagtggctctgtcacccactaggtcaccgcttctttgtggatggggattgggctatt
cgcagcactcctaaagaaagcatctacagccaggctggcaatactgtggatcctctggcc
caggtgactcaggcgttcagagagcacctcttggagaaggctctgtactgtgtcgcccag
cctcacggagagaaaagttccagccagggcgagggggagtatgctgatgccctggagtac
ctccagctgctgattagcgcatcagatgcagccggtgccacatcccagtcctttgcgatc
ggctccaacatggccactgtgactggctgtgacccccactccaagtggtggtcctcagtc
gccgtggtgatcatcaactggctccaaggagacgacgctgcggcggagagactgtatccg
actgttgagcacctgccccgcagtttgcagaacgcagagagtcttctgcccaaggcgtgt
ctgaacacattcagggcagtccgggctctgctgtccaagccagaaaactgccagttgagt
ctgagctacagcgacaaggccagcgccctgctccgagacagcctcaacctaggaccacac
tgccacagctccagtttagacaaggtcatccagttgctcttatgtgatctgctcttggtg
atgaggaccaacgtgtggcgtctgcagcagcaaggggccggtcctgcagggtctgggctg
gtgggtaccagcggccccgcgggggtccaccaggcctccccgccggagctccaaggcttt
cagcaagatctcagttccctgcgcaaactggcgcacagcttcagacctgcaatgcgaaga
ttgttcctccatgaagctacagccaggctgatggcgggggccagtcccactcgcacgcat
cagctcctggatcgctcgctgcgacgcagagcaacacccggagccaagacagaggagtgt
gagacgcgaccgggccagcgggagcaggcggaggctgtgatgctggcgtgccgctacctt
cctccctcctttctgtcggctcccggccaaagggtgggcatgttggctgatgcggcccgc
accctggagaagctgggagacaagagaaccctgcacgactgccagcaaatgatcatcaag
ctgggcagcggcaccaccgtcaccaacagctag
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integrated database retrieval system
