Lates calcarifer (barramundi perch): 108880007
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Entry
108880007 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: thyroid receptor-interacting protein 6
KO
K12792
thyroid receptor-interacting protein 6
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
108880007
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Gene cluster
GFIT
Motif
Pfam:
LIM
DUF7576
zf-dskA_traR
Motif
Other DBs
NCBI-GeneID:
108880007
NCBI-ProteinID:
XP_050931458
UniProt:
A0AAJ8BEA6
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Position
LG14:complement(8330996..8338880)
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AA seq
579 aa
AA seq
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MSGPTWLPPRTLDSPERAVPQMSHSAGSAIYRAPNKKGVSDFRPKYGPYDQNGGGGGGGG
GMANRYMATGPTGGPIHHPSSDHYYSPAHGPKEDRTWSPHMDSYELMHRGPEKPVSYHSK
IDADIDSLTSMLADLDSHPQDSSTQLYDNVAYDNVPYNKYLSGDHYKPAHQSAAPPQGRP
SMGYPPHPQSQYHPAPPYPSDHQTPQYSTSHQQDYYSSSSTPKPYPQPVPASYTTASTPT
GPRFSVQVKTAQPVTYSQTGRQAEQAYTPPPPRQHVSRPPPQTQASPQGWYPPHPGSQAQ
DLHSEAGYKGSSSGSGGRVSQVPVSKRGMENNQTGSGAAQSSAYQSSKGIATTRPEEELD
RLTKKLVYDMNHPPTEDYFGRCARCGDNVVGDGSGCIAMEQVFHVECFTCITCHARLRGQ
PFYALDKRSYCESCYISTLERCSKCSKPILDRILRAMGKAYHPRCFTCVVCNCCLDGVPF
TVDATSQIHCIEDFHRKYAPRCSVCGEPIMPEPGQEETVRIVALDRSFHVNCYVCEECGL
LLSSEGEGRGCYPLDGHILCKSCSARRIQDLSAKISTDC
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtccggtcccacctggcttccaccgaggactctggacagcccagagcgagccgtcccc
cagatgtcccactctgcagggtcagccatctacagagcccccaacaagaagggcgtgtcg
gacttccggccaaaatatggtccctatgaccagaacggaggaggaggaggaggaggagga
gggatggccaacagatacatggctactggacctacaggtggacccattcatcatccatct
agcgatcactattactcccccgcccatggtcccaaagaagaccgcacctggagccctcac
atggatagctacgagctaatgcaccgtggacctgagaagccagtgagctatcactctaaa
attgatgctgatattgactccctgaccagtatgcttgctgatctggacagccacccacag
gactccagcacacaactgtacgacaacgtggcgtacgacaacgtgccttacaacaaatac
ctctcaggggatcactacaaacctgcacaccagagcgcagcccctcctcagggtcggcca
tccatgggctaccccccccacccccagagccaataccacccggctcctccttaccccagt
gatcaccagacacctcagtactccacctcccaccagcaggactactactcctcctcttca
acccctaagccttacccacagcccgtcccggcctcctacaccaccgcctcgacccccacc
gggcccaggttcagcgtccaggtcaagacggcgcagcctgtcacctactcgcagacgggg
aggcaggcggagcaggcctacaccccgccccctcctcgccagcacgtgtcacgccccccg
ccccagactcaggcaagtcctcagggctggtaccctccgcacccaggttcacaagctcaa
gatctgcactctgaggccgggtacaaggggagcagctcaggttctggaggaagagtcagc
caggttccagtatctaagagagggatggagaataatcagactgggtcaggagctgcacag
agttctgcttatcagtccagcaagggaatagcaacaaccaggcctgaggaggagctggat
cgactcactaagaagttggtatatgatatgaaccacccccctacagaggactattttggt
cgctgcgcccgctgcggtgacaacgtggtcggcgatggcagcggctgcattgccatggag
caggtgtttcacgtggagtgtttcacgtgcatcacctgccacgcccgtctccgagggcaa
cccttctacgctttggacaagaggagctactgcgagagttgttacattagcacactggag
cgctgttcaaagtgctccaagcccatcctggaccgtatcctgcgggccatgggaaaggcc
taccatccgcgctgtttcacctgcgttgtctgtaactgctgcttggatggggtgcccttc
actgtggacgccacgtctcagatccactgcatagaagactttcacagaaagtacgctcct
cgctgctcagtgtgtggtgagcccatcatgcctgagccgggccaggaagagacggtcagg
atagtggctctggatcgtagcttccatgtcaattgttacgtctgtgaggaatgtggtctt
ctgctgtcgtctgagggggagggtcgaggctgttacccgctcgacggacacatcttgtgc
aagagctgcagcgctcgccgcatccaggacctctcggccaaaatctccaccgactgttga
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