Lates calcarifer (barramundi perch): 108880008
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Entry
108880008 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: rho guanine nucleotide exchange factor 15
KO
K20687
Rho guanine nucleotide exchange factor 15
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108880008
Membrane trafficking [BR:
lcf04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
108880008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
SH3_1
SH3_9
SH3_2
PH
SOS1_NGEF_PH
RHG20_PH
Motif
Other DBs
NCBI-GeneID:
108880008
NCBI-ProteinID:
XP_018526985
UniProt:
A0AAJ7LM14
LinkDB
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Position
LG14:8294732..8310243
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AA seq
1029 aa
AA seq
DB search
MSVQEASQRPMSPSPFKPEVKQRPEIPPKPLTQPGSPPLGDRGSGKSHTGGKVKRIVNKF
SKQESASNDPEEQATNGTSELTPGKRFKRLPTIKPKPNRSSLQLQIKGEQAPPLPVKRSR
ILQKQKEIGGAEEGESISVEGGRSAPDGKEVEVQPNGGGEAEVQHSPDAPLSPCCDPSCS
CVCHLQRPGMKLVWVPVDAEEDEEEQRGEVEEDGEDWEEYEEEERGGEGDSEAEDEVDGI
SEGDEVEAWKQKKAKFNQCLDVLIGEGNRRRSDPGPHSVFTTLADTRSHSPPVPPKQATN
NQAPTQDKEEDNIYEATLLVVDPATKKTTPMCKELDIPLIRVRKPARRSKLSSSTSDPTS
EFQTDSEPISSPQNEPPAIPPRMPLNPDSRSLTPVHRGGIPLPQPTLEEWRSLRPSSPTG
STASGLSPQRAVTPPPASSLVPQRPPPPPPKTDPRRLSSASVQSLTQKKEGEENGGNEGE
KDDFLDELNSSLRRETLFSWESRLQDEPLYQTYRASVITKEIRRQTVCRNISKTSVDFAM
DMNARRSGTGAGTQTGNGQPKGSPGQTLAQSTLWQDLPNVRESGVLEQLTSDQCKYQESM
FEVLTSEASYLRSLRVLTDHFLNSRELDETIIIRDKKTLFSNILRVEEVSERFLKDLEER
IFKDVVFPDICDVIHYHAQHKFPVYIDYVRNQIYQEKAFTELMKNNVQFAAVITRLQESP
QCQRLPFASFLLLPFQRITRIKMLIENILKRTKEGTNEEKTASKALASVTKIIEDCNTEV
GKMRQVEELISVSKTLDFDKLKNIPIISQNRFLEKKGELQEMSKGGTLFNMRAKFTPVHL
FLFNDLLVIAAKKGAERFVVLDHAHRSLVQVQPIDEGGSSGGPYENCFNVTLLENHQGRM
MERLLKAPSQSDMHRWMAAFPNPTNPDRQDDEVIYEDWDCPQVQCVEPYVAQQADELTLE
PTEIINVIRKTNEGWYEGIRLSDGQKGWFPVGNVIEITNEHVRRRNLRERYRVMQAASLV
TNSKVRTLN
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtccaggaagcatcccaaaggcccatgtcgccctcacctttcaaacctgaggtc
aaacagagaccagagatccccccgaaaccactaacacaaccaggctcccctcctctggga
gacagaggcagcgggaagagccacaccggtgggaaagtcaaaaggattgtgaacaaattt
agcaaacaggaatctgcatcaaacgaccctgaagaacaagccaccaatggtacctcagaa
ctcacgccaggtaagcggttcaaaaggctgcctacaataaagcccaaaccaaaccgctcc
agtctgcagcttcagataaagggagagcaggcgcctccgctgcctgtgaagaggagccgc
atcctgcagaaacagaaggagattggaggagcagaggagggggagagcatcagtgtggag
ggaggtcgatcagcacctgatggtaaggaggtggaggttcagccgaatggaggaggggag
gcagaagtgcagcacagtccagatgcccccctcagcccctgctgcgacccgagctgcagc
tgcgtgtgtcacctccagcggcccggcatgaagctggtatgggtgcctgtggacgcagaa
gaggatgaggaagagcagaggggggaggttgaggaggatggggaggactgggaggagtat
gaggaggaagagcgaggaggggagggagacagtgaggcagaggatgaggtggacgggatc
tctgagggcgatgaggtcgaggcgtggaaacaaaaaaaggcaaagttcaaccagtgtttg
gacgttctgatcggcgaggggaacaggcggcggtcagacccggggcctcacagtgtcttc
accactctcgctgacacgcgctctcattctccccctgttcccccgaaacaagccacaaac
aaccaggcacccacccaagacaaagaagaagacaatatttacgaggccacgcttctagtg
gttgaccccgccactaaaaagaccacacccatgtgtaaggagctggatattcctctgatc
agggtgcgtaaaccggcccgtcggagtaaactgtcctccagcacttcagaccctacatct
gagtttcagacagacagcgaacccatctcgagcccacaaaacgagccgcccgccatcccg
ccgaggatgcctctgaatccagacagccgcagcctcacgccggtgcacagaggaggcatc
cctctccctcagcccaccctggaggagtggcgcagcttgcggccttcgtcacccacgggc
tccactgctagtgggctgagcccccaacgagccgtgactccacccccagcgagctccctc
gtgcctcagagacccccacctccaccgccgaagacagaccccaggaggctcagcagtgcc
tcagtgcaatctctaacacagaagaaagaaggagaggagaatggagggaacgaaggagaa
aaagacgactttcttgatgaactgaatagttccctcaggagggagactttgttcagctgg
gagtcccgcctgcaggatgagcctctgtaccagacgtaccgtgccagcgtcatcaccaag
gagatccgacgtcagacagtttgtcgtaacatcagtaagactagtgtggactttgctatg
gacatgaacgcccgtcgctctgggaccggtgctggtactcagactggaaatggacaaccc
aagggcagccccggtcaaacactagcccagagcactctgtggcaggacctcccaaacgta
cgggagagtggagtgctggagcagctcacctctgatcagtgcaagtaccaggagagtatg
tttgaggttttgacatcagaggcctcttatcttcgatccctgcgagtcctgaccgatcat
ttcctgaacagccgggagctggacgagacgatcatcatcagggacaagaaaaccctcttc
tccaacatcctgagggtcgaggaggtcagcgagaggttcttgaaagacttggaagaacgc
atattcaaggatgtggtcttccctgacatctgtgacgttatccactaccacgcccagcac
aagttccccgtctacatcgactatgttcgcaaccagatctaccaggagaaggccttcact
gaactcatgaagaacaacgtgcagtttgccgcagtcatcactcgtctccaggagtcgcct
cagtgtcagcggctgccctttgcgtccttcctgttgctgccctttcagcgaataacacgc
atcaaaatgctcattgagaacatcctgaagagaacaaaggaggggacaaacgaggagaag
accgcctctaaggctctggcttctgtgaccaagatcattgaagattgtaatactgaggtc
ggaaagatgagacaggtggaggagctgatcagtgtctctaaaacactggattttgacaag
ctcaagaacatcccaatcatctctcagaatcgtttcctggagaaaaagggagagctgcag
gagatgtccaaaggggggactctcttcaacatgagggccaagttcacgcccgtccacctc
ttcctcttcaacgatctgctggtcatcgctgccaagaagggtgcagagcgttttgtggtt
ctcgaccacgcccaccgctctctggtgcaggtgcagccaatagatgaaggcgggagcagc
ggcggcccctacgagaactgcttcaatgtcaccctgctggagaaccaccagggacgcatg
atggagcggctgctcaaagctccctcccagtcagacatgcacaggtggatggctgctttc
cccaaccccaccaaccccgacagacaagatgacgaagtgatttatgaagactgggactgt
cctcaggtgcagtgtgtggagccgtacgttgctcagcaggcagacgaactcaccctggag
cccactgaaatcatcaacgtcattcgcaaaaccaacgagggctggtatgaagggatccga
ctgtcggacggtcagaagggctggttccccgtaggaaacgtcatcgagatcaccaacgag
cacgtgaggaggcgaaacctccgggagcgctacagggtcatgcaggctgccagcctggtc
acaaacagcaaggtccgcacccttaattag
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