Lates calcarifer (barramundi perch): 108880165
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Entry
108880165 CDS
T04895
Symbol
gga3b
Name
(RefSeq) LOW QUALITY PROTEIN: ADP-ribosylation factor-binding protein GGA3
KO
K12404
ADP-ribosylation factor-binding protein GGA
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04142
Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
108880165 (gga3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108880165 (gga3b)
Membrane trafficking [BR:
lcf04131
]
Endosome - Golgi transport
Others
GGA
108880165 (gga3b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VHS
Alpha_adaptinC2
GAT
GGA_N-GAT
CcsR_C
DASH_Dad4
LidA_Long_CC
DUF2096_N
DUF8799
VCIP135_N
Motif
Other DBs
NCBI-GeneID:
108880165
NCBI-ProteinID:
XP_018527099
LinkDB
All DBs
Position
LG11:12207573..12216032
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AA seq
703 aa
AA seq
DB search
MAYQEEESLESWLNKATHPTNRQEDWEYIIGFCDQINKELEGPQIAVTLLVHKIHSPQEW
EALQALTVLEACMKNCGRRFHNEVGKYRFLNELIKVVSPKYMGDSAPEKVKMKIVEMLYS
WTVAFPDEAKIGEAYQTLRRQGLVMRDPELPLDKTLIPSPPTRPKHPVFDNEDMGKLLAE
LLRSKNPEDLQEANRLIKNMVKEDEARVQKVTKRLHTLEEVNINVKLLTEMLSHYNKDSS
TDSDKEIIKELYERCDKLRRAAFKMATETEDNDTSLGDILQASDDLSKVINSYKKIVEGQ
PINGDSEEPQSTAGHSESETTDTLIDLAGPDTPSPPQPIIPPAQSSHPVSANPTASPIPV
LPPPPKRLAGSHGSQSSSPSHLPLDKASTALSLLDDELLSLGLNDPPTSLSSQSKPKLKE
VSSQWTSLQAPAPSVDMFGSITCSGPVVPPAEPATSIHSLQNLQDLAMIGFSDHKSLPSQ
MTARGSNFGINPAAVPPLVTGQGSPSSASLLQGTMPGSPALSHARVQGLGSAPGSPLFRX
SLSPCHPPLQGSPARASDISLSNVHVPLEAIRPSKVLPVTAYDKDGVRVLLNFASDCPPC
RPDVLVMVVSMLNTAPLPVHNVVLQAAVPKSMKVKLQPPSGTDLAPFNPILPPASITQIM
LLANPAKEKVRLRYKLAFTLGDRLCNEVGEVDQFPPPEAWGHL
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggcgtaccaggaagaggagtcgcttgaatcttggctcaataaagccacccatccaaca
aacagacaggaggactgggagtacattataggcttctgtgatcagatcaacaaggaattg
gagggtcctcagatagcggtgactctgctcgtccacaaaatccactcaccacaagaatgg
gaggctcttcaggctctgacagtattagaggcttgtatgaagaactgcgggagaaggttt
cataatgaagttggaaaatacagatttttgaatgagctgattaaagttgtgtctcctaag
tacatgggtgacagtgcacctgagaaggtgaagatgaagattgtagagatgctgtacagc
tggacggttgcttttcctgatgaggccaagatcggcgaagcctaccagaccctgagaaga
caaggccttgtgatgcgtgacccagagttacctctggacaagactctgattccctcgccc
ccaacacgacctaaacacccggtgtttgacaacgaggacatgggaaagctgcttgctgag
cttctccgcagtaaaaatccagaggatctccaggaagccaacagattaattaaaaacatg
gtgaaagaggatgaggcacgagtacagaaggttacaaagcggctgcacacactggaggag
gtgaacatcaacgtcaagctgttgactgagatgctttcccactacaataaagacagctcc
accgactcagacaaggagatcatcaaggaactctacgagcggtgtgacaagctgaggcgt
gctgctttcaaaatggccactgagacagaggacaatgacaccagtttaggtgacatcctg
caggccagtgatgatctctccaaagtcattaactcctataagaagatagtcgaggggcag
ccgatcaacggtgacagtgaagagcctcaatctacagctggtcacagtgagagtgagacc
acagatacactgatcgacctcgccggccctgacactcctagcccgcctcagcccatcatc
cctcctgcccagtcctcacatcctgtctccgccaatcccacggcttctccgatacccgtc
ctgcctcctcctccaaaacgcctggctggctcccatggcagtcagagcagcagcccgagt
catctccccctcgacaaggcctccactgctctctcactccttgatgatgagctgctgtcc
ctaggcctaaatgacccccctacctctttgagcagccaatcaaaacccaagttgaaagaa
gtgtccagtcaatggacttccttgcaggctccagcaccaagtgtggatatgtttggcagt
ataacttgttcaggtccagtggtgcccccagctgagccagccaccagcatacacagtctc
cagaacctgcaagacctggccatgataggcttttcagatcacaagagtttgcccagccag
atgacggccagaggaagcaactttggaataaaccctgcagcagtacctcccctcgtaact
gggcagggctctccctcctcagcctctcttctccagggtacgatgcctggttctcctgcc
ctgtcccacgctagggtacagggcctgggctcggccccggggagcccactgtttcggnnc
tctctgtcgccctgccaccctcccctccagggcagcccggccagagcctcagacatctcc
ctgagcaatgtgcacgtccctctggaggccatcagacccagtaaagtgctgcctgtgaca
gcctacgataaggatggcgttcgtgtgctgctcaactttgcatccgactgtcccccctgc
agacctgacgttctcgtaatggttgtgtccatgctgaacacagcgcccctgcctgttcac
aatgtggtactgcaagctgctgtgcccaagtcaatgaaggtgaagctgcagcctccatca
ggaacagacctggcaccattcaatcccattctacctccagcctccatcacccagatcatg
ttactggctaatccagcaaaggagaaagtgcgtctgcgctacaagctggctttcacacta
ggagaccgtctgtgcaacgaggtcggagaggtcgaccagttccccccaccagaggcgtgg
ggtcacctatag
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