Lates calcarifer (barramundi perch): 108880255
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Entry
108880255 CDS
T04895
Name
(RefSeq) hepatocyte nuclear factor 1-beta-A
KO
K08034
transcription factor 2, hepatocyte nuclear factor 1-beta
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108880255
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
108880255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1B_C
HNF-1_N
Homeodomain
Homeobox_KN
LolA
HTH_5
Motif
Other DBs
NCBI-GeneID:
108880255
NCBI-ProteinID:
XP_018527229
UniProt:
A0A4W6DX06
LinkDB
All DBs
Position
Unknown
AA seq
573 aa
AA seq
DB search
MFSKMVSKLTSLQQELLSALLDSGVTKDVLIQALDDMDPSPPGFGVKLESLSMSPAPPQS
GKMNGADVDSKPVFHTLTNGHSKGKLSGDEGSEDGDDYDTPPILKELQSLNTEEAAEQRA
EVDRMLAEDPWRAARMIKGYMQQHNIPQREVVDITGLNQSHLSQHLNKGTPMKTQKRAAL
YTWYVRKQREILRQFNQATQGSGSNMTDKGNQDPVFFFPEFNPSSQGMGVPGDEVGSEPS
CKKMRRNRFKWGPASQQILYQAYERQKNPSKEEREALVEECNRAECLQRGVSPSKAQGLG
SNLVTEVRVYNWFANRRKEEAFRQKLAMDAIAAPTHTINPLLSHSSPHHPQTSASPPMRY
SQGPGEVTSSTTISHHSSNAMATSQSVLQQVSPGGLDHSHSLLSPDAKMISGSGGGLPPV
STLTNIHSSHHSHQQTQNLIMPLSGVMAIAQSLNTSQSQTVPVINSVAGSLAALQPVQFS
QQLHSPHQQSLMQQSPSHMSQQPFMATVTHSHMYPHKQEPPQYSHPSRFPSAMVVTDANS
ISTLSSMSSSKTDAPVNKMVQLGGLSWCPLQAW
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgttctctaaaatggtatccaagctgacatccctgcagcaggagctcctcagcgccctg
ctggactcaggagttaccaaagatgttctgatccaggccctggacgatatggaccccagc
ccgccgggctttggagtaaaactggagagcctgtccatgtctcccgctcctcctcagagc
ggaaagatgaacggggcggacgtcgactcgaagcccgtcttccacacgctcaccaacggc
cacagcaagggcaagctgtccggggacgagggctccgaggacggggacgactacgatacc
ccgccgatactgaaggagctccagtcgctcaacaccgaggaggccgccgagcaaagggcg
gaggtggaccgcatgttggcagaggatccgtggcgtgctgcccgcatgatcaaaggttac
atgcagcagcacaacatcccccaacgggaggtggtggacatcacggggctgaaccagtct
cacctctcccagcacctcaacaagggcacgcccatgaaaacacagaagcgagcggccctc
tacacctggtatgtcaggaaacagcgggaaattctccgacagttcaaccaagcaacacaa
ggttctggcagcaatatgacagacaaaggcaatcaggatccggtgttttttttcccagag
ttcaacccgtccagtcagggcatgggtgtgcctggtgacgaggtgggcagtgaaccctcc
tgcaagaaaatgagacgtaaccgtttcaagtgggggcccgcatcccagcaaatcctgtac
caggcctacgagcggcagaaaaaccccagcaaggaggagagggaggctttggtagaagag
tgcaacagggccgagtgtcttcagcgaggcgtctccccctccaaagcgcagggccttggc
tccaatctggtcacagaagtgcgggtctacaactggtttgccaacaggcgcaaggaagaa
gccttcaggcagaagctggccatggacgccattgctgcgccgacccacactatcaaccct
ctgctgtcgcacagctcgccgcaccacccccagaccagcgcttcaccccccatgcgttac
agccaaggccccggtgaggtcacctcctccacgaccatcagtcaccacagtagcaacgcc
atggcgaccagccagtcagtgctccaacaggtgtctccggggggactggaccacagccac
agtctgctgtcacctgacgccaaaatgatttccggctcaggtggaggacttcctccagtc
agcacgctgaccaacatccacagttcccatcacagtcaccagcagacacaaaacctcatc
atgcctctatctggagtcatggccatagcacagagtttaaacacatcacagtctcagacg
gtgccagtgatcaatagcgtggcgggcagcctcgcagcactgcagccagtgcagttttcc
cagcagctccacagcccccaccagcagagcctgatgcagcagtcccccagccacatgagc
cagcagccattcatggctactgtcacacactcacacatgtatcctcacaagcaggagccc
ccacaatattcccacccgtcacgtttcccctcggccatggtggtcacagacgccaacagc
atcagcaccctcagctccatgtcctctagcaagacggatgctcctgtaaacaagatggtg
caacttgggggtctctcctggtgtcctcttcaagcttggtga
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