Lates calcarifer (barramundi perch): 108880339
Help
Entry
108880339 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: chondroitin sulfate synthase 1-like
KO
K13499
chondroitin sulfate synthase [EC:
2.4.1.175
2.4.1.226
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00532
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
lcf01100
Metabolic pathways
Module
lcf_M00058
Glycosaminoglycan biosynthesis, chondroitin sulfate backbone
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
108880339
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
lcf01003
]
108880339
Enzymes [BR:
lcf01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.175 glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase
108880339
2.4.1.226 N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase
108880339
Glycosyltransferases [BR:
lcf01003
]
Glycan extension
O-Glycan
108880339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CHGN
Fringe
Glyco_transf_7C
Glyco_tranf_2_2
Glycos_transf_2
Galactosyl_T
SF3a60_bindingd
Motif
Other DBs
NCBI-GeneID:
108880339
NCBI-ProteinID:
XP_050928650
UniProt:
A0AAJ8B122
LinkDB
All DBs
Position
LG9:complement(21336743..21349669)
Genome browser
AA seq
827 aa
AA seq
DB search
MPIHVSTSSHNGSIHVFTSALSRAKAMALKSRRPWTTMIFGVFLGFTASSWLIVPQVLES
TRKKSLKSRHPRGHCGCQRPGQPAFQSGGGRDIXRGEQXSGETGRPVSRPRHFLYVGVMT
AKKYLRSRTVAAYKTWASSIPGKVEFFSSAGSGTVLSPVPVPVVSLAGVDDSYPPQKKSF
MMLKYIHDHYLDKYEWFMRADDDVYIRGEKLELFLRSLNSSKPLYLGQTGLGMAEELGRL
ALEPGENFCMGGPGMIFSREVLRRMVPHISTCLREMYTTHEDVEVGRCVRRFGGTQCVWS
YEMQQLFYENYEQNKKGFIEELHSSKIHNAITLHPNKKPAYQYRLHSFTLSREISRLRYR
TILLHREGLIMSYLSDTEVLWEDQQLGSPPSYMHYQPNERNDVIEWDFLTGRHIYSAVEN
KIARQSLGNLLRTALEDIILQVMEMINKNSKTRGRVIDFKEIQYGYYRVDPMHGAEYIID
LLLLYKKHKGRKITVPVRRHAYLQQPFSRPFFTEIEELDVVELVTNINSESQSLSFLSNS
LKFLSPFQFYGSTREIWKQSQKKVNIVVPLSGRYDTFVHFMENFEEVCLIAKLNVKLSIV
LVDNERTQNSEKHIQLIKDYHRKYPTADLSIIPMTGNFSRGLALELGSSQFDNDTLLFFC
DVDLIFSGDALQRCRDNAVQGRQAYFPVAFSQYNPKIVYTEKAQRENKFVLTKKSGFWQD
YGFGITCVFKSDLLKAGGFDTSILGWGLEDVDLFTKVINSGLKVLRSQEPGIFHIYHPVH
CNTSLEQKQYKMCLASRASTFASTMQLAELWLEKHIEIGYNRTSSDI
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgcccatacacgtcagcacctcctcacacaacggcagcattcatgtgtttacctcagct
ctgagcagggcaaaagcaatggctctgaaatcgcggagaccgtggacgacaatgattttc
ggcgtctttctcggattcaccgcgtcctcttggctcatcgtacctcaggttctggagagt
acacggaaaaaatccctgaagtcccgacatccacgaggacactgcggttgtcaaagaccg
ggacaacccgcatttcagtcgggaggaggacgggatatttagcgcggggaacagnntagc
ggagaaaccgggagacccgtaagtagaccaaggcatttcctctatgtcggcgttatgacg
gcgaaaaaatacttgaggtctcgcaccgttgctgcatacaagacctgggcgagctccata
cccgggaaagtggagttcttctcgagcgctgggtccggtacggtcctctcgcccgtccca
gtcccagtggtttcgctggcaggtgtggacgactcctacccgccacagaagaagtcattc
atgatgctgaagtacatccacgaccactacctggataaatacgagtggttcatgcgggca
gacgacgatgtttatataagaggtgagaagctggagctgttcctgcggtcactgaacagc
agtaagcccctttaccttggccagacgggcttgggcatggctgaggagttgggcagattg
gccctagagcctggagagaacttctgcatgggaggccctgggatgatcttcagtagagag
gtgctacgcagaatggtccctcacatcagtacctgcctgagagagatgtataccacccat
gaagatgtggaagtgggccgttgtgtgcgacgttttggaggaacacagtgcgtgtggtct
tatgagatgcaacagctcttctatgagaattatgaacaaaacaagaaaggtttcattgaa
gaacttcacagtagcaagatccacaatgccattacactgcaccccaacaaaaagcctgcc
taccaataccggctccacagcttcacgctgagccgtgagatctcaaggcttcggtaccgc
accatcctgctccaccgcgaaggcctgattatgagttacctcagtgatacagaggtactg
tgggaagaccaacagctgggatccccaccttcatacatgcactatcagcccaatgagaga
aatgatgtaattgagtgggatttccttacaggtcgccacatttattctgctgttgagaac
aagattgcccgccaaagccttgggaacttgcttcggactgcactggaggacattatactg
caggtcatggaaatgattaataagaattcaaaaacacgtggccgtgtaattgactttaaa
gagattcagtatggctactacagagtggatccaatgcatggtgcagagtacatcatagac
ctactgcttctgtacaagaaacataagggacgcaaaataacagtgcctgtgaggcggcac
gcttaccttcagcagccctttagccggcccttctttactgaaattgaagagttagatgtg
gttgaacttgtgactaacatcaactctgaatcccaatccctgtctttcctgtccaactct
ctgaagttcttgtcccctttccagttctatggatcaacaagggaaatatggaagcaaagc
cagaagaaggtcaacattgtcgtcccactgtctggtcgttacgacacctttgtccacttc
atggagaactttgaggaagtgtgtttgatagccaaactaaatgttaaactctccattgtt
cttgtggacaatgagagaactcagaacagcgaaaaacatattcagttaatcaaagactac
cacaggaagtatcctacagctgacctttccataatccccatgacaggcaacttttcacga
ggcctggctctggagctgggctcctcacaatttgacaatgacaccctactgttcttctgt
gatgttgatcttatctttagcggtgatgccttgcaacgctgtagagacaatgctgtccaa
ggaagacaggcctatttccctgttgcctttagtcagtacaaccccaagatagtgtatacc
gagaaggcccaaagagaaaacaaatttgtactgactaagaaaagtggtttctggcaagat
tatggctttggaatcacctgtgttttcaagagtgatttactaaaagcaggaggttttgac
acctcaatcctaggctgggggctggaagatgtggacttgttcacaaaagttattaattct
ggtttgaaagtgttgcgcagtcaagaaccaggaattttccacatttatcatcctgtccac
tgcaacacaagtcttgagcagaagcaatataaaatgtgccttgcatcaagagcaagtacc
tttgcatcaacaatgcagttggcagagctgtggctggagaaacacatagaaatagggtat
aacagaacttcatctgacatttga
DBGET
integrated database retrieval system
