Lates calcarifer (barramundi perch): 108880368
Help
Entry
108880368 CDS
T04895
Name
(RefSeq) leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1a
KO
K24491
leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
108880368
Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
108880368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
I-set
LRR_4
Ig_3
LRR_1
ig
fn3
Ig_2
LRR_14
LRR_5
LRR_EndoS
C2-set_2
C2-set_3
RNA_pol_Rpb1_2
LRR_6
Motif
Other DBs
NCBI-GeneID:
108880368
NCBI-ProteinID:
XP_018527360
UniProt:
A0A4W6E7Y6
LinkDB
All DBs
Position
LG16_LG22:9105748..9110609
Genome browser
AA seq
651 aa
AA seq
DB search
MFLVLLLGLYVATGELVSPVSSCPSQCSCFYHNLSDGSKARSVICNDPDISLVPVGFPVD
TSKLRIEKTAIQRIPSEAFNYLSSLEFLWMSFNTLSALNPDSFRGLFNLEELRLDGNALT
AFPWESVMDMPSLRLLDLHNNQLTSLPAEATAYIKNLTYLDLSSNNLQTLPAEVLSTWLA
VKPVQGPESSKMILGLHDNPWVCDCRLYDLVQFQKSPTLSVAFIDTRLRCSAPESVSGVL
FSDAELRRCQLPRIHTAVARVRSAVGNNVLLRCGTIGVPIPDLTWRKADGRALNGSVQQE
TSKEGITWSILSVPAVSYRDSGKYICKATNYAGNAEAVISLVVSNSPKPEGNQTSNDKKA
KVKKPNQMGKAAYQEKLVARYVVPTSNPSSLPALDPDLPPGLGPDPGLASYSLADRATPG
PVTSSNPDALLDLEKTNLSNLAANTSSLQQDPDRVVRSVKVVGDTDNTISLNWRAPKAKN
TTAFSVLYAVFGERDMRKINVGAGQNRVTIEGLVPRTKYIACVCVRGLIPKKEQCVIFST
DEAASATGTQKLINVIVITVACIIAVPLTVIVCCGALKRRIQKYWGKKSKDIQDSYVTFE
TLSPGTKAKGLEGEYLNRLNPEESNRLLSARSSLDSEATAKIEGQPNEYFC
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgttcctcgttctgctcctggggctctacgtggccacaggtgaacttgtctccccagtg
agctcctgcccgtcgcagtgcagctgtttttaccacaacctgagtgatggatcaaaggcc
aggagcgtgatttgcaatgatcccgatatatctcttgtgcctgtcgggttccctgttgac
acgtccaagctgcggattgagaagacggccatccagcggataccaagcgaagccttcaac
tacctctccagtctggaattcttgtggatgtctttcaacaccctgtccgccttgaacccg
gacagtttccggggattgttcaatcttgaagagcttcgtctggatgggaatgccctcacc
gcctttccctgggaatctgtcatggatatgcccagcctcagacttctcgatttgcacaac
aaccagctcacctcgctgcccgcggaggccaccgcttacatcaagaacctcacctacctg
gatctgtccagcaacaacttgcagaccctgccggcagaggtgctgtccacctggctggcg
gtaaaaccagtgcaagggccggaaagctccaaaatgatacttggtctccacgacaacccc
tgggtatgtgactgccggctctatgacctggtccagttccagaagtctccaactctttca
gtggcattcatcgacacaaggctccggtgctcagctccggagagtgtgtctggggttttg
ttcagcgatgctgagctgcggcgctgtcagctcccacgtatccacaccgccgtggcacga
gtccggagtgctgttggaaacaatgtgctgctccgctgtgggaccattggagtacccatc
ccagacctgacatggcgcaaggcagatggacgtgccctcaatggaagtgtccagcaggaa
acctcaaaggagggaatcacttggtccatccttagtgtcccagctgtgtcctaccgtgat
tcagggaaatacatctgcaaggccactaactatgcagggaacgctgaagctgtcatttct
cttgtcgtctctaactcaccaaaaccagaggggaaccaaaccagcaatgataagaaagcc
aaagtcaagaaacccaaccaaatgggcaaagccgcctaccaggagaaactggtggcgaga
tatgtcgttccaacctccaacccttcatccctccctgccctggatcctgacctcccacct
ggtcttggtcctgatcctggactagccagttacagcttggctgacagagccacaccaggg
cctgtcacctcctccaacccagatgcactgctggatctggaaaagacaaacctgagcaac
ttggcggccaatacctcatcgctacagcaggacccggacagagtggtccgctctgtaaag
gtggtgggggacacagacaatacaatttctctaaactggagagcccctaaagccaagaac
acaacagcatttagtgtgctgtacgctgtgtttggagagagggacatgaggaagatcaat
gttggggcaggacagaaccgtgtaaccatcgaagggctggtgcccaggaccaagtacatt
gcctgtgtatgtgtgagggggctaatccccaagaaggagcagtgtgtcatattttccact
gatgaagcagccagtgccactggcacccagaagctgattaatgtcattgtgatcacagtg
gcctgtatcatcgctgtcccgctcactgtcatcgtgtgctgcggggcgctgaagagacgc
attcagaagtactggggaaagaaatccaaggacatccaagattcatatgtcacctttgaa
acactgtcgcctggcacgaaggccaaagggctagagggcgagtatttgaacagactgaac
ccagaggagtccaacaggctgctgtcagcccgctccagcctggactctgaggccacagct
aagatagagggacagcctaatgagtacttctgctga
DBGET
integrated database retrieval system
