Lates calcarifer (barramundi perch): 108880429
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Entry
108880429 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: MHC class II regulatory factor RFX1a
KO
K09173
regulatory factor X 1/2/3
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108880429
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Other basic domains
RF-X
108880429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BCD_RFX
RFX1_trans_act
RFX_DNA_binding
Motif
Other DBs
NCBI-GeneID:
108880429
NCBI-ProteinID:
XP_050929746
UniProt:
A0AAJ8BBF2
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All DBs
Position
LG11:complement(12548404..12559730)
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AA seq
1001 aa
AA seq
DB search
MATSGYVGEIQPAVQPQGAGVTVTPGQPDTSSTPATAPQFLAEIQTTVATPTVVTPTGQT
TPTEQATSITTQKPAAGSQTQSTAQAQPAQTQYVTAEIQGSPTQSGNAQSTPQYIVVTVT
EGSLHSSDSVSDSSPPPAVVQTGVPTQVVQQVQTAQQRSVVQATSQIAKTEPGTQLSVTS
LQPVHISQELLRATEVTALVRDKNLEELQEHDEIGQPEFLAWASSDYIRECCGKPLYLPL
DLLQYYQSLYLLSMCVDKETGAHPAVTSSGPDQPPLQATTTTFQVQQQLTPVPVQHVYTN
QVQYVEGGDTNYTTSTIRSSTFPYTDTPLYTQTTAAQYYEGQPTSGSQASTPGTPLTVSV
TAGTTGGVSMFVAQPTSAAGGGATVVTTGGTTNGAGDGAGTNGGAAGSYVIQGGYMLGSS
SGGAAGNSQNYSHTARASPATVSITEGEESSVPSADKKVQWLLDNYETAEGVSLPRSTLY
CHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKAGSSLLRL
MEDQQHLAMRQQPFSQKQRLKPVHKVEGMTNGTASGAGQQQQQQQGSGHVDISTQVQQYQ
QFLDASRALPEFPDIDLQGKSLPEGIELEHIKSFQLLYREHCEAILDVMVNLQFTLVETL
WKTFWRFSQSQAGDAALAVHDESEKRLPKSCLVLLCKYEPVLRWSRDCDNSLYQGLVEIL
IPDVLRPIPSALTQAIRNFAKSLESWLTNAMMNIPEEMVRIKVTSANAFAQTLRRYTSLN
HLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKLTLQQQ
NSLEQWAAWLDGVVSQVLKPYQHSPAFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSF
HLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFASLGRGLNQLDPDKEEEEEEEEESDE
EGQELSLPSDGAVLGEESLEPPAKLARTDQRVLFTTGSADN
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggccacctcaggctacgtaggtgagatccagccggcagtccaaccccagggcgccggt
gttactgtcacacctgggcaacctgacaccagttccacccctgcaactgcccctcagttt
ctggctgagatccagactactgtggctactcccactgttgtcacacccactggccaaact
actcccactgaacaagctacttctatcaccactcagaagcctgcagctggtagtcaaacc
cagtccacagcacaggcccagccagctcagactcagtatgtgactgcagagatccagggg
tcccccacacagtctggaaatgctcaaagtactcctcagtacatcgttgttacagtcaca
gagggctcccttcactcaagtgacagtgtgtcagactctagtccccctccagctgtggtg
cagacaggagttcccacacaggttgttcagcaggtacagacagctcagcagaggtccgtg
gtgcaggccacttctcagatagccaagactgagcccggaacccagctcagtgtcaccagt
ctacagcctgttcatattagccaggagctcctccgtgccacagaggtgacagcattagtc
agggataagaatctagaagaattgcaggagcatgatgagataggacagccagagttcctg
gcctgggcatcatcagactacataagagagtgctgcggcaagcccctctacctccccttg
gatctccttcagtattaccagtcactgtacctgctctctatgtgtgtggacaaagagaca
ggagcccaccctgcagtcaccagctcaggcccagatcagccaccactgcaggctacaact
accactttccaagtccagcagcagctcacaccagtgccagtccaacatgtgtacaccaat
caagtgcagtatgtggaaggaggagacaccaactataccaccagcaccattcgctccagc
acctttccttacactgacacacccctgtacacccagaccacagctgcccagtattatgaa
ggtcagccaacatctggctcacaggcctctacccctggaacacccctaaccgtctctgtg
actgctggcacgacagggggtgtgtccatgtttgtggcccagcccaccagcgcagcaggg
ggaggcgccacagtagtgaccacaggtggcaccacaaacggggcaggggatggggcaggc
accaacggtggcgcagcaggcagctatgtgatccaggggggttatatgctgggcagcagc
agcggaggggcagctggcaacagtcagaactactcacacaccgcccgcgcctccccagcc
actgtgagtattacagagggcgaggagagtagcgtgccgtcggcagacaaaaaggtacag
tggttgctggacaactatgagacagctgaaggagtgagtctgccacgttccaccctctac
tgccactatctgctgcactgccaggagcagaagctagaacctgttaacgctgcctctttt
gggaaactcattcgatctgtgttcatggggctacgcacgcgacgcctcggcacacggggt
aattctaagtaccactactatggcctgaggatcaaggcaggctcatctcttctccgtctg
atggaagaccagcagcatctggccatgaggcagcagcccttctcacagaaacaaaggttg
aagcctgtgcataaagtggaaggaatgaccaatggcacagcatcaggagcaggccagcaa
cagcaacagcagcagggatcagggcacgtggacattagcacccaggttcaacagtaccag
cagttcctagatgcctccagagctctcccagagttcccagacatcgacctccaggggaag
tctctgccagagggcatcgagctggagcacataaagagctttcagctgctgtacagagaa
cactgtgaggcaatactggacgtgatggtcaacctgcagtttaccctggtggagacactg
tggaagaccttctggaggttcagtcagagtcaggctggagacgctgcattggctgttcat
gacgagtcagagaaacgtctccctaagtcctgcctggtgttgctgtgcaagtatgagcca
gtgctgcgctggagccgtgactgtgacaacagtctgtaccagggtctggtggagatactt
atccctgatgtcctcaggcccatccccagtgccttaacccaagccatccgcaactttgcc
aagagcctggagagctggctgaccaatgccatgatgaacatcccggaggagatggtccgc
atcaaggtaacctcagccaatgcatttgcccagaccctgcgtcgctacaccagtctgaac
cacctcgcccaggcggcacgtgccgtcctccaaaacacggctcagatcaaccaaatgctt
tccgacctcaaccgtgtcgactttgctaacgttcaggagcaggcttcatgggtgtgccgg
tgtgaagaccgcgtcgtccagcggctggagcaggacttcaagctgacccttcagcagcag
aactccctggagcagtgggctgcgtggctggatggtgtggtctcccaagtcctaaaaccc
taccaacacagccctgccttccctaaggccgccaagctcttcctgctcaagtggtccttt
tacagttcgatggtgatcagggacctgaccctgcggagcgctgccagttttggttccttt
cacctgatccgcctgctgtacgatgagtacatgtactacctgatagaacacagagtggcc
caggctaagggagaaacccccatcgctgtcatgggagagtttgccagcttaggccggggt
ctgaaccagctggatccagacaaagaagaggaagaggaagaggaagaggagagtgatgag
gaaggtcaggagctgtccctcccctctgacggggccgtgttaggagaggagtctctggag
ccgcctgccaagctggccagaactgaccagagagtcctcttcaccaccggatccgctgac
aactaa
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